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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=18)
PPGPPGPTGPRGPPGPPG

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4axy-a1-m1-cC 18 18 1.0000 1.0000 1.0000 0.005 4axy-a1-m1-cA_4axy-a1-m1-cC, 4axy-a1-m1-cB_4axy-a1-m1-cC
2 4axy-a1-m1-cB 18 18 1.0000 1.0000 1.0000 0.005 4axy-a1-m1-cA_4axy-a1-m1-cB, 4axy-a1-m1-cB_4axy-a1-m1-cC
3 4axy-a1-m1-cA 18 18 1.0000 1.0000 1.0000 0.005 4axy-a1-m1-cA_4axy-a1-m1-cB, 4axy-a1-m1-cA_4axy-a1-m1-cC
4 3zha-a4-m1-cO 17 17 0.9444 1.0000 1.0000 0.017 3zha-a4-m1-cM_3zha-a4-m1-cO
5 3zha-a4-m1-cN 17 17 0.9444 1.0000 1.0000 0.017 3zha-a4-m1-cM_3zha-a4-m1-cN
6 3zha-a4-m1-cM 17 17 0.9444 1.0000 1.0000 0.017 3zha-a4-m1-cM_3zha-a4-m1-cN, 3zha-a4-m1-cM_3zha-a4-m1-cO
7 6q41-a1-m1-cC 46 16 0.6667 0.2609 0.7500 5.0 6q41-a1-m1-cB_6q41-a1-m1-cC
8 6q41-a1-m1-cB 46 16 0.6667 0.2609 0.7500 5.0 6q41-a1-m1-cB_6q41-a1-m1-cC
9 3hr2-a1-m9-cB 944 17 0.7222 0.0138 0.7647 8.2 3hr2-a1-m7-cB_3hr2-a1-m9-cB, 3hr2-a1-m8-cB_3hr2-a1-m9-cB
10 3hr2-a1-m8-cB 944 17 0.7222 0.0138 0.7647 8.2 3hr2-a1-m8-cB_3hr2-a1-m9-cB
11 3hr2-a1-m7-cB 944 17 0.7222 0.0138 0.7647 8.2 3hr2-a1-m7-cB_3hr2-a1-m9-cB

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Reference:
Jacob Schwartz et al.

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