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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=99)
PQFHLWKRPVVTAHIEGQPVEVLLDTGADDSIVTGIELGPHYTPKIVGGIGGFINTKEYK
NVEIEVLGKRIKGTIMTGDTPINIFGRNLLTALGMSLNF

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2sam-a1-m2-cA 99 99 1.0000 1.0000 1.0000 1.21e-68 2sam-a1-m1-cA_2sam-a1-m2-cA
2 2sam-a1-m1-cA 99 99 1.0000 1.0000 1.0000 1.21e-68 2sam-a1-m1-cA_2sam-a1-m2-cA
3 3t3c-a1-m1-cB 99 99 0.4949 0.4949 0.4949 3.31e-35 3t3c-a1-m1-cA_3t3c-a1-m1-cB
4 3t3c-a1-m1-cA 99 99 0.4949 0.4949 0.4949 3.31e-35 3t3c-a1-m1-cA_3t3c-a1-m1-cB
5 2p3d-a1-m1-cB 99 99 0.5253 0.5253 0.5253 4.65e-35 2p3d-a1-m1-cA_2p3d-a1-m1-cB
6 2p3d-a1-m1-cA 99 99 0.5253 0.5253 0.5253 4.65e-35 2p3d-a1-m1-cA_2p3d-a1-m1-cB
7 4mc2-a1-m1-cB 99 99 0.5253 0.5253 0.5253 4.90e-34 4mc2-a1-m1-cA_4mc2-a1-m1-cB
8 4mc2-a1-m1-cA 99 99 0.5253 0.5253 0.5253 4.90e-34 4mc2-a1-m1-cA_4mc2-a1-m1-cB
9 1ztz-a2-m2-cB 99 99 0.5253 0.5253 0.5253 4.90e-34 1ztz-a2-m1-cA_1ztz-a2-m2-cB, 1ztz-a2-m1-cB_1ztz-a2-m2-cB, 1ztz-a2-m2-cA_1ztz-a2-m2-cB
10 1ztz-a2-m2-cA 99 99 0.5253 0.5253 0.5253 4.90e-34 1ztz-a2-m2-cA_1ztz-a2-m2-cB
11 1ztz-a2-m1-cB 99 99 0.5253 0.5253 0.5253 4.90e-34 1ztz-a2-m1-cB_1ztz-a2-m2-cB
12 1ztz-a2-m1-cA 99 99 0.5253 0.5253 0.5253 4.90e-34 1ztz-a2-m1-cA_1ztz-a2-m2-cB
13 3mws-a1-m1-cB 99 99 0.5051 0.5051 0.5051 7.94e-34 3mws-a1-m1-cA_3mws-a1-m1-cB
14 3mws-a1-m1-cA 99 99 0.5051 0.5051 0.5051 7.94e-34 3mws-a1-m1-cA_3mws-a1-m1-cB
15 3ttp-a1-m1-cB 99 99 0.5354 0.5354 0.5354 1.33e-33 3ttp-a1-m1-cA_3ttp-a1-m1-cB
16 3ttp-a1-m1-cA 99 99 0.5354 0.5354 0.5354 1.33e-33 3ttp-a1-m1-cA_3ttp-a1-m1-cB
17 2p3c-a1-m1-cB 98 99 0.5354 0.5408 0.5354 1.62e-33 2p3c-a1-m1-cA_2p3c-a1-m1-cB
18 2p3c-a1-m1-cA 98 99 0.5354 0.5408 0.5354 1.62e-33 2p3c-a1-m1-cA_2p3c-a1-m1-cB
19 3ggu-a1-m1-cB 99 99 0.4848 0.4848 0.4848 1.80e-33 3ggu-a1-m1-cA_3ggu-a1-m1-cB
20 3ggu-a1-m1-cA 99 99 0.4848 0.4848 0.4848 1.80e-33 3ggu-a1-m1-cA_3ggu-a1-m1-cB
21 3u7s-a1-m1-cB 99 99 0.4848 0.4848 0.4848 2.59e-33 3u7s-a1-m1-cA_3u7s-a1-m1-cB
22 3u7s-a1-m1-cA 99 99 0.4848 0.4848 0.4848 2.59e-33 3u7s-a1-m1-cA_3u7s-a1-m1-cB
23 2rkg-a1-m1-cB 100 100 0.5253 0.5200 0.5200 2.97e-33 2rkg-a1-m1-cA_2rkg-a1-m1-cB
24 2rkg-a1-m1-cA 100 100 0.5253 0.5200 0.5200 2.97e-33 2rkg-a1-m1-cA_2rkg-a1-m1-cB
25 6p9a-a1-m1-cB 99 99 0.4848 0.4848 0.4848 3.60e-33 6p9a-a1-m1-cA_6p9a-a1-m1-cB
26 6p9a-a1-m1-cA 99 99 0.4848 0.4848 0.4848 3.60e-33 6p9a-a1-m1-cA_6p9a-a1-m1-cB
27 1kj4-a3-m4-cD 99 99 0.5051 0.5051 0.5051 6.22e-33 1kj4-a3-m3-cA_1kj4-a3-m4-cD, 1kj4-a3-m4-cA_1kj4-a3-m4-cD
28 1kj4-a3-m4-cC 99 99 0.5051 0.5051 0.5051 6.22e-33 1kj4-a3-m2-cB_1kj4-a3-m4-cC
29 1kj4-a3-m4-cB 99 99 0.5051 0.5051 0.5051 6.22e-33 1kj4-a3-m2-cB_1kj4-a3-m4-cB
30 1kj4-a3-m4-cA 99 99 0.5051 0.5051 0.5051 6.22e-33 1kj4-a3-m4-cA_1kj4-a3-m4-cD
31 1kj4-a3-m3-cA 99 99 0.5051 0.5051 0.5051 6.22e-33 1kj4-a3-m3-cA_1kj4-a3-m4-cD
32 1kj4-a3-m2-cB 99 99 0.5051 0.5051 0.5051 6.22e-33 1kj4-a3-m2-cB_1kj4-a3-m4-cB, 1kj4-a3-m2-cB_1kj4-a3-m4-cC
33 2f80-a2-m4-cB 99 99 0.5152 0.5152 0.5152 6.36e-33 2f80-a2-m1-cA_2f80-a2-m4-cB
34 2f80-a2-m1-cA 99 99 0.5152 0.5152 0.5152 6.36e-33 2f80-a2-m1-cA_2f80-a2-m4-cB
35 3oud-a1-m1-cA 99 99 0.4848 0.4848 0.4848 1.04e-32 3oud-a1-m1-cA_3oud-a1-m1-cB
36 8dch-a1-m1-cB 99 99 0.4949 0.4949 0.4949 1.30e-32 8dch-a1-m1-cA_8dch-a1-m1-cB
37 8dch-a1-m1-cA 99 99 0.4949 0.4949 0.4949 1.30e-32 8dch-a1-m1-cA_8dch-a1-m1-cB
38 6ogt-a1-m2-cA 99 99 0.4949 0.4949 0.4949 1.45e-32 6ogt-a1-m1-cA_6ogt-a1-m2-cA
39 6ogt-a1-m1-cA 99 99 0.4949 0.4949 0.4949 1.45e-32 6ogt-a1-m1-cA_6ogt-a1-m2-cA
40 1mt9-a1-m1-cB 99 99 0.5051 0.5051 0.5051 1.88e-32 1mt9-a1-m1-cA_1mt9-a1-m1-cB
41 1mt9-a1-m1-cA 99 99 0.5051 0.5051 0.5051 1.88e-32 1mt9-a1-m1-cA_1mt9-a1-m1-cB
42 3oud-a1-m1-cB 99 99 0.4848 0.4848 0.4848 3.75e-32 3oud-a1-m1-cA_3oud-a1-m1-cB
43 1k6c-a1-m1-cA 94 99 0.4848 0.5106 0.4848 8.52e-27 1k6c-a1-m1-cB_1k6c-a1-m1-cA
44 1k6c-a1-m1-cB 93 99 0.5051 0.5376 0.5051 1.51e-26 1k6c-a1-m1-cB_1k6c-a1-m1-cA
45 2b7z-a1-m1-cB 99 99 0.5253 0.5253 0.5253 5.95e-26 2b7z-a1-m1-cA_2b7z-a1-m1-cB
46 2b7z-a1-m1-cA 99 99 0.5253 0.5253 0.5253 5.95e-26 2b7z-a1-m1-cA_2b7z-a1-m1-cB
47 5b18-a2-m1-cD 99 99 0.4747 0.4747 0.4747 1.63e-25 5b18-a2-m1-cC_5b18-a2-m1-cD
48 5b18-a2-m1-cC 99 99 0.4747 0.4747 0.4747 1.63e-25 5b18-a2-m1-cC_5b18-a2-m1-cD
49 2azc-a2-m2-cB 99 99 0.5152 0.5152 0.5152 2.16e-25 2azc-a2-m1-cA_2azc-a2-m2-cB
50 2azc-a2-m2-cA 99 99 0.5152 0.5152 0.5152 2.16e-25 2azc-a2-m1-cA_2azc-a2-m2-cA
51 2azc-a2-m1-cA 99 99 0.5152 0.5152 0.5152 2.16e-25 2azc-a2-m1-cA_2azc-a2-m2-cA, 2azc-a2-m1-cA_2azc-a2-m2-cB
52 2fmb-a1-m2-cA 104 104 0.3535 0.3365 0.3365 1.20e-08 2fmb-a1-m1-cA_2fmb-a1-m2-cA
53 2fmb-a1-m1-cA 104 104 0.3535 0.3365 0.3365 1.20e-08 2fmb-a1-m1-cA_2fmb-a1-m2-cA
54 3nr6-a2-m4-cA 120 95 0.2727 0.2250 0.2842 1.35e-05 3nr6-a2-m4-cB_3nr6-a2-m4-cA
55 3nr6-a2-m4-cB 114 94 0.2626 0.2281 0.2766 7.73e-05 3nr6-a2-m2-cB_3nr6-a2-m4-cB, 3nr6-a2-m4-cB_3nr6-a2-m4-cA
56 3nr6-a2-m2-cB 114 94 0.2626 0.2281 0.2766 7.73e-05 3nr6-a2-m2-cB_3nr6-a2-m4-cB
57 2hah-a1-m2-cA 112 105 0.3333 0.2946 0.3143 1.79e-04 2hah-a1-m1-cA_2hah-a1-m2-cA
58 2hah-a1-m1-cA 112 105 0.3333 0.2946 0.3143 1.79e-04 2hah-a1-m1-cA_2hah-a1-m2-cA
59 1bai-a1-m1-cB 124 93 0.2929 0.2339 0.3118 4.84e-04 1bai-a1-m1-cA_1bai-a1-m1-cB
60 1bai-a1-m1-cA 124 93 0.2929 0.2339 0.3118 4.84e-04 1bai-a1-m1-cA_1bai-a1-m1-cB
61 6fiv-a1-m2-cA 112 82 0.2323 0.2054 0.2805 0.001 6fiv-a1-m1-cA_6fiv-a1-m2-cA
62 6fiv-a1-m1-cA 112 82 0.2323 0.2054 0.2805 0.001 6fiv-a1-m1-cA_6fiv-a1-m2-cA
63 6s1w-a1-m1-cB 108 98 0.2323 0.2130 0.2347 0.28 6s1w-a1-m1-cA_6s1w-a1-m1-cB
64 7bgt-a1-m1-cB 108 98 0.2323 0.2130 0.2347 0.34 7bgt-a1-m1-cA_7bgt-a1-m1-cB
65 7bgt-a1-m1-cA 108 98 0.2323 0.2130 0.2347 0.34 7bgt-a1-m1-cA_7bgt-a1-m1-cB
66 3ezf-a1-m2-cA 342 50 0.1717 0.0497 0.3400 1.4 3ezf-a1-m1-cA_3ezf-a1-m2-cA
67 3ezf-a1-m1-cA 342 50 0.1717 0.0497 0.3400 1.4 3ezf-a1-m1-cA_3ezf-a1-m2-cA
68 3ez9-a2-m3-cB 350 50 0.1717 0.0486 0.3400 1.5 3ez9-a2-m1-cB_3ez9-a2-m3-cB
69 3ez9-a2-m1-cB 350 50 0.1717 0.0486 0.3400 1.5 3ez9-a2-m1-cB_3ez9-a2-m3-cB
70 2wwo-a1-m1-cA 158 71 0.2020 0.1266 0.2817 1.6 2wwo-a1-m1-cB_2wwo-a1-m1-cA
71 2wwo-a1-m1-cB 157 71 0.2020 0.1274 0.2817 1.6 2wwo-a1-m1-cB_2wwo-a1-m1-cA
72 2xlf-a1-m1-cB 225 36 0.1414 0.0622 0.3889 6.4 2xlf-a1-m1-cA_2xlf-a1-m1-cB
73 2xlf-a1-m1-cA 225 36 0.1414 0.0622 0.3889 6.4 2xlf-a1-m1-cA_2xlf-a1-m1-cB
74 4hrn-a1-m1-cB 123 39 0.1515 0.1220 0.3846 6.4 4hrn-a1-m1-cA_4hrn-a1-m1-cB
75 4hrn-a1-m1-cA 121 39 0.1515 0.1240 0.3846 6.9 4hrn-a1-m1-cA_4hrn-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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