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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=98)
PQFKKGVLELCCLFLIQKKDCYGYELANQVSKYIEVAEGAIYPVLRRLVKEEYCSTYLVE
SPSRKYYQLTVKGEIYLNELISEWNNFTDSVAKLLTEG

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 7wjp-a1-m2-cA 98 98 1.0000 1.0000 1.0000 5.70e-68 7wjp-a1-m1-cA_7wjp-a1-m2-cA
2 7wjp-a1-m1-cA 98 98 1.0000 1.0000 1.0000 5.70e-68 7wjp-a1-m1-cA_7wjp-a1-m2-cA
3 4esb-a1-m2-cA 103 99 0.4184 0.3981 0.4141 2.25e-17 4esb-a1-m1-cA_4esb-a1-m2-cA
4 4esb-a1-m1-cA 103 99 0.4184 0.3981 0.4141 2.25e-17 4esb-a1-m1-cA_4esb-a1-m2-cA
5 5h20-a1-m2-cA 103 94 0.3673 0.3495 0.3830 3.52e-16 5h20-a1-m1-cA_5h20-a1-m2-cA
6 5h20-a1-m1-cA 103 94 0.3673 0.3495 0.3830 3.52e-16 5h20-a1-m1-cA_5h20-a1-m2-cA
7 3hhh-a1-m1-cA 100 91 0.3265 0.3200 0.3516 3.91e-13 3hhh-a1-m1-cA_3hhh-a1-m1-cB
8 3l7w-a1-m2-cA 104 83 0.3061 0.2885 0.3614 5.94e-13 3l7w-a1-m1-cA_3l7w-a1-m2-cA
9 3l7w-a1-m1-cA 104 83 0.3061 0.2885 0.3614 5.94e-13 3l7w-a1-m1-cA_3l7w-a1-m2-cA
10 3hhh-a1-m1-cB 101 93 0.3265 0.3168 0.3441 7.93e-12 3hhh-a1-m1-cA_3hhh-a1-m1-cB
11 5zqh-a1-m2-cA 101 94 0.3265 0.3168 0.3404 8.37e-12 5zqh-a1-m1-cA_5zqh-a1-m2-cA
12 5zqh-a1-m1-cA 101 94 0.3265 0.3168 0.3404 8.37e-12 5zqh-a1-m1-cA_5zqh-a1-m2-cA
13 5dym-a1-m2-cA 96 84 0.3061 0.3125 0.3571 1.41e-10 5dym-a1-m1-cA_5dym-a1-m2-cA
14 5dym-a1-m1-cA 96 84 0.3061 0.3125 0.3571 1.41e-10 5dym-a1-m1-cA_5dym-a1-m2-cA
15 4esf-a1-m2-cA 100 83 0.2857 0.2800 0.3373 1.28e-09 4esf-a1-m1-cA_4esf-a1-m2-cA
16 4esf-a1-m1-cA 100 83 0.2857 0.2800 0.3373 1.28e-09 4esf-a1-m1-cA_4esf-a1-m2-cA
17 2esh-a2-m2-cA 114 99 0.3163 0.2719 0.3131 1.52e-07 2esh-a2-m1-cA_2esh-a2-m2-cA
18 2esh-a2-m1-cA 114 99 0.3163 0.2719 0.3131 1.52e-07 2esh-a2-m1-cA_2esh-a2-m2-cA
19 1xma-a1-m2-cB 103 84 0.2449 0.2330 0.2857 9.02e-06 1xma-a1-m1-cA_1xma-a1-m2-cB
20 6abt-a1-m1-cB 98 86 0.2857 0.2857 0.3256 9.57e-06 6abt-a1-m1-cA_6abt-a1-m1-cB
21 6abt-a1-m1-cA 98 86 0.2857 0.2857 0.3256 9.57e-06 6abt-a1-m1-cA_6abt-a1-m1-cB
22 1xma-a1-m1-cA 101 85 0.2449 0.2376 0.2824 1.22e-04 1xma-a1-m1-cA_1xma-a1-m2-cB
23 4ejo-a2-m3-cB 108 95 0.2755 0.2500 0.2842 8.69e-04 4ejo-a2-m1-cB_4ejo-a2-m3-cB
24 4ejo-a2-m1-cB 108 95 0.2755 0.2500 0.2842 8.69e-04 4ejo-a2-m1-cB_4ejo-a2-m3-cB
25 3l9f-a2-m1-cC 170 71 0.2347 0.1353 0.3239 0.003 3l9f-a2-m1-cB_3l9f-a2-m1-cC
26 3l9f-a2-m1-cB 170 71 0.2347 0.1353 0.3239 0.003 3l9f-a2-m1-cB_3l9f-a2-m1-cC
27 6r1l-a1-m2-cA 100 89 0.2347 0.2300 0.2584 0.009 6r1l-a1-m1-cA_6r1l-a1-m2-cA
28 6r1l-a1-m1-cA 100 89 0.2347 0.2300 0.2584 0.009 6r1l-a1-m1-cA_6r1l-a1-m2-cA
29 6jyi-a1-m1-cA 166 65 0.1735 0.1024 0.2615 0.062 6jyi-a1-m1-cB_6jyi-a1-m1-cA
30 2a61-a2-m1-cD 137 79 0.2041 0.1460 0.2532 0.14 2a61-a2-m1-cD_2a61-a2-m1-cC
31 7aqx-a1-m1-cB 362 56 0.1633 0.0442 0.2857 0.50 7aqx-a1-m1-cA_7aqx-a1-m1-cB
32 7aqx-a1-m1-cA 362 56 0.1633 0.0442 0.2857 0.50 7aqx-a1-m1-cA_7aqx-a1-m1-cB
33 4xrf-a1-m4-cA 142 67 0.1939 0.1338 0.2836 0.64 4xrf-a1-m1-cA_4xrf-a1-m4-cA, 4xrf-a1-m2-cA_4xrf-a1-m4-cA
34 4xrf-a1-m2-cA 142 67 0.1939 0.1338 0.2836 0.64 4xrf-a1-m2-cA_4xrf-a1-m4-cA
35 4xrf-a1-m1-cA 142 67 0.1939 0.1338 0.2836 0.64 4xrf-a1-m1-cA_4xrf-a1-m4-cA
36 1xsd-a1-m2-cA 125 45 0.1429 0.1120 0.3111 2.6 1xsd-a1-m1-cA_1xsd-a1-m2-cA
37 1xsd-a1-m1-cA 125 45 0.1429 0.1120 0.3111 2.6 1xsd-a1-m1-cA_1xsd-a1-m2-cA
38 1sd4-a1-m1-cB 118 45 0.1429 0.1186 0.3111 2.8 1sd4-a1-m1-cA_1sd4-a1-m1-cB
39 1sd4-a1-m1-cA 118 45 0.1429 0.1186 0.3111 2.8 1sd4-a1-m1-cA_1sd4-a1-m1-cB
40 6hhn-a1-m2-cA 99 57 0.1327 0.1313 0.2281 3.8 6hhn-a1-m1-cA_6hhn-a1-m2-cA
41 6hhn-a1-m1-cA 99 57 0.1327 0.1313 0.2281 3.8 6hhn-a1-m1-cA_6hhn-a1-m2-cA
42 3p32-a1-m2-cA 306 40 0.1429 0.0458 0.3500 4.1 3p32-a1-m1-cA_3p32-a1-m2-cA
43 3p32-a1-m1-cA 306 40 0.1429 0.0458 0.3500 4.1 3p32-a1-m1-cA_3p32-a1-m2-cA
44 7mgv-a1-m1-cB 333 48 0.1327 0.0390 0.2708 5.3 7mgv-a1-m1-cA_7mgv-a1-m1-cB
45 7mgv-a1-m1-cA 333 48 0.1327 0.0390 0.2708 5.3 7mgv-a1-m1-cA_7mgv-a1-m1-cB
46 7pqh-a1-m1-cB 1208 34 0.1224 0.0099 0.3529 6.0 7pqh-a1-m1-cB_7pqh-a1-m1-cJ
47 7pqh-a1-m1-cJ 1213 34 0.1224 0.0099 0.3529 6.0 7pqh-a1-m1-cB_7pqh-a1-m1-cJ

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Reference:
Jacob Schwartz et al.

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