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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=99)
PQITLWKRPFVTVKIGGQITEALLDTGADDTIIENISLPGRWKPKIIQGIGGFLKVRQYD
QIPIEIEGHKVIGSVVVGPTPVNVIGRNVMSQLGATLNF

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 8dch-a1-m1-cB 99 99 1.0000 1.0000 1.0000 3.36e-67 8dch-a1-m1-cA_8dch-a1-m1-cB
2 8dch-a1-m1-cA 99 99 1.0000 1.0000 1.0000 3.36e-67 8dch-a1-m1-cA_8dch-a1-m1-cB
3 2f80-a2-m4-cB 99 99 0.7879 0.7879 0.7879 1.96e-55 2f80-a2-m1-cA_2f80-a2-m4-cB
4 2f80-a2-m1-cA 99 99 0.7879 0.7879 0.7879 1.96e-55 2f80-a2-m1-cA_2f80-a2-m4-cB
5 4mc2-a1-m1-cB 99 99 0.7879 0.7879 0.7879 2.31e-55 4mc2-a1-m1-cA_4mc2-a1-m1-cB
6 4mc2-a1-m1-cA 99 99 0.7879 0.7879 0.7879 2.31e-55 4mc2-a1-m1-cA_4mc2-a1-m1-cB
7 1ztz-a2-m2-cB 99 99 0.7879 0.7879 0.7879 2.31e-55 1ztz-a2-m1-cA_1ztz-a2-m2-cB, 1ztz-a2-m1-cB_1ztz-a2-m2-cB, 1ztz-a2-m2-cA_1ztz-a2-m2-cB
8 1ztz-a2-m2-cA 99 99 0.7879 0.7879 0.7879 2.31e-55 1ztz-a2-m2-cA_1ztz-a2-m2-cB
9 1ztz-a2-m1-cB 99 99 0.7879 0.7879 0.7879 2.31e-55 1ztz-a2-m1-cB_1ztz-a2-m2-cB
10 1ztz-a2-m1-cA 99 99 0.7879 0.7879 0.7879 2.31e-55 1ztz-a2-m1-cA_1ztz-a2-m2-cB
11 3oud-a1-m1-cA 99 99 0.7677 0.7677 0.7677 5.33e-55 3oud-a1-m1-cA_3oud-a1-m1-cB
12 3oud-a1-m1-cB 99 99 0.7677 0.7677 0.7677 1.74e-54 3oud-a1-m1-cA_3oud-a1-m1-cB
13 6ogt-a1-m2-cA 99 99 0.7576 0.7576 0.7576 2.95e-54 6ogt-a1-m1-cA_6ogt-a1-m2-cA
14 6ogt-a1-m1-cA 99 99 0.7576 0.7576 0.7576 2.95e-54 6ogt-a1-m1-cA_6ogt-a1-m2-cA
15 1kj4-a3-m4-cD 99 99 0.7374 0.7374 0.7374 4.38e-54 1kj4-a3-m3-cA_1kj4-a3-m4-cD, 1kj4-a3-m4-cA_1kj4-a3-m4-cD
16 1kj4-a3-m4-cC 99 99 0.7374 0.7374 0.7374 4.38e-54 1kj4-a3-m2-cB_1kj4-a3-m4-cC
17 1kj4-a3-m4-cB 99 99 0.7374 0.7374 0.7374 4.38e-54 1kj4-a3-m2-cB_1kj4-a3-m4-cB
18 1kj4-a3-m4-cA 99 99 0.7374 0.7374 0.7374 4.38e-54 1kj4-a3-m4-cA_1kj4-a3-m4-cD
19 1kj4-a3-m3-cA 99 99 0.7374 0.7374 0.7374 4.38e-54 1kj4-a3-m3-cA_1kj4-a3-m4-cD
20 1kj4-a3-m2-cB 99 99 0.7374 0.7374 0.7374 4.38e-54 1kj4-a3-m2-cB_1kj4-a3-m4-cB, 1kj4-a3-m2-cB_1kj4-a3-m4-cC
21 1mt9-a1-m1-cB 99 99 0.7273 0.7273 0.7273 1.16e-53 1mt9-a1-m1-cA_1mt9-a1-m1-cB
22 1mt9-a1-m1-cA 99 99 0.7273 0.7273 0.7273 1.16e-53 1mt9-a1-m1-cA_1mt9-a1-m1-cB
23 3u7s-a1-m1-cB 99 99 0.7475 0.7475 0.7475 1.65e-53 3u7s-a1-m1-cA_3u7s-a1-m1-cB
24 3u7s-a1-m1-cA 99 99 0.7475 0.7475 0.7475 1.65e-53 3u7s-a1-m1-cA_3u7s-a1-m1-cB
25 3ggu-a1-m1-cB 99 99 0.7576 0.7576 0.7576 6.37e-53 3ggu-a1-m1-cA_3ggu-a1-m1-cB
26 3ggu-a1-m1-cA 99 99 0.7576 0.7576 0.7576 6.37e-53 3ggu-a1-m1-cA_3ggu-a1-m1-cB
27 2rkg-a1-m1-cB 100 100 0.7576 0.7500 0.7500 1.09e-52 2rkg-a1-m1-cA_2rkg-a1-m1-cB
28 2rkg-a1-m1-cA 100 100 0.7576 0.7500 0.7500 1.09e-52 2rkg-a1-m1-cA_2rkg-a1-m1-cB
29 6p9a-a1-m1-cB 99 99 0.7071 0.7071 0.7071 2.43e-52 6p9a-a1-m1-cA_6p9a-a1-m1-cB
30 6p9a-a1-m1-cA 99 99 0.7071 0.7071 0.7071 2.43e-52 6p9a-a1-m1-cA_6p9a-a1-m1-cB
31 3ttp-a1-m1-cB 99 99 0.7475 0.7475 0.7475 3.90e-52 3ttp-a1-m1-cA_3ttp-a1-m1-cB
32 3ttp-a1-m1-cA 99 99 0.7475 0.7475 0.7475 3.90e-52 3ttp-a1-m1-cA_3ttp-a1-m1-cB
33 3t3c-a1-m1-cB 99 99 0.7374 0.7374 0.7374 3.10e-51 3t3c-a1-m1-cA_3t3c-a1-m1-cB
34 3t3c-a1-m1-cA 99 99 0.7374 0.7374 0.7374 3.10e-51 3t3c-a1-m1-cA_3t3c-a1-m1-cB
35 2p3c-a1-m1-cB 98 99 0.7071 0.7143 0.7071 5.68e-51 2p3c-a1-m1-cA_2p3c-a1-m1-cB
36 2p3c-a1-m1-cA 98 99 0.7071 0.7143 0.7071 5.68e-51 2p3c-a1-m1-cA_2p3c-a1-m1-cB
37 2b7z-a1-m1-cB 99 99 0.8283 0.8283 0.8283 8.79e-51 2b7z-a1-m1-cA_2b7z-a1-m1-cB
38 2b7z-a1-m1-cA 99 99 0.8283 0.8283 0.8283 8.79e-51 2b7z-a1-m1-cA_2b7z-a1-m1-cB
39 3mws-a1-m1-cB 99 99 0.6970 0.6970 0.6970 3.63e-49 3mws-a1-m1-cA_3mws-a1-m1-cB
40 3mws-a1-m1-cA 99 99 0.6970 0.6970 0.6970 3.63e-49 3mws-a1-m1-cA_3mws-a1-m1-cB
41 2azc-a2-m2-cB 99 99 0.7475 0.7475 0.7475 9.73e-49 2azc-a2-m1-cA_2azc-a2-m2-cB
42 2azc-a2-m2-cA 99 99 0.7475 0.7475 0.7475 9.73e-49 2azc-a2-m1-cA_2azc-a2-m2-cA
43 2azc-a2-m1-cA 99 99 0.7475 0.7475 0.7475 9.73e-49 2azc-a2-m1-cA_2azc-a2-m2-cA, 2azc-a2-m1-cA_2azc-a2-m2-cB
44 1k6c-a1-m1-cA 94 99 0.7374 0.7766 0.7374 1.71e-48 1k6c-a1-m1-cB_1k6c-a1-m1-cA
45 2p3d-a1-m1-cB 99 99 0.6768 0.6768 0.6768 2.82e-48 2p3d-a1-m1-cA_2p3d-a1-m1-cB
46 2p3d-a1-m1-cA 99 99 0.6768 0.6768 0.6768 2.82e-48 2p3d-a1-m1-cA_2p3d-a1-m1-cB
47 1k6c-a1-m1-cB 93 99 0.7273 0.7742 0.7273 2.94e-46 1k6c-a1-m1-cB_1k6c-a1-m1-cA
48 5b18-a2-m1-cD 99 99 0.7071 0.7071 0.7071 7.84e-45 5b18-a2-m1-cC_5b18-a2-m1-cD
49 5b18-a2-m1-cC 99 99 0.7071 0.7071 0.7071 7.84e-45 5b18-a2-m1-cC_5b18-a2-m1-cD
50 2sam-a1-m2-cA 99 99 0.4949 0.4949 0.4949 1.30e-32 2sam-a1-m1-cA_2sam-a1-m2-cA
51 2sam-a1-m1-cA 99 99 0.4949 0.4949 0.4949 1.30e-32 2sam-a1-m1-cA_2sam-a1-m2-cA
52 1bai-a1-m1-cB 124 90 0.3535 0.2823 0.3889 8.27e-07 1bai-a1-m1-cA_1bai-a1-m1-cB
53 1bai-a1-m1-cA 124 90 0.3535 0.2823 0.3889 8.27e-07 1bai-a1-m1-cA_1bai-a1-m1-cB
54 3nr6-a2-m4-cA 120 93 0.2626 0.2167 0.2796 2.98e-04 3nr6-a2-m4-cB_3nr6-a2-m4-cA
55 2fmb-a1-m2-cA 104 99 0.2929 0.2788 0.2929 5.14e-04 2fmb-a1-m1-cA_2fmb-a1-m2-cA
56 2fmb-a1-m1-cA 104 99 0.2929 0.2788 0.2929 5.14e-04 2fmb-a1-m1-cA_2fmb-a1-m2-cA
57 2hah-a1-m2-cA 112 109 0.3939 0.3482 0.3578 0.002 2hah-a1-m1-cA_2hah-a1-m2-cA
58 2hah-a1-m1-cA 112 109 0.3939 0.3482 0.3578 0.002 2hah-a1-m1-cA_2hah-a1-m2-cA
59 6s1w-a1-m1-cA 97 92 0.2525 0.2577 0.2717 0.008 6s1w-a1-m1-cA_6s1w-a1-m1-cB
60 6s1w-a1-m1-cB 108 94 0.2525 0.2315 0.2660 0.009 6s1w-a1-m1-cA_6s1w-a1-m1-cB
61 7bgt-a1-m1-cB 108 94 0.2525 0.2315 0.2660 0.010 7bgt-a1-m1-cA_7bgt-a1-m1-cB
62 7bgt-a1-m1-cA 108 94 0.2525 0.2315 0.2660 0.010 7bgt-a1-m1-cA_7bgt-a1-m1-cB
63 3nr6-a2-m4-cB 114 97 0.2525 0.2193 0.2577 0.018 3nr6-a2-m2-cB_3nr6-a2-m4-cB, 3nr6-a2-m4-cB_3nr6-a2-m4-cA
64 3nr6-a2-m2-cB 114 97 0.2525 0.2193 0.2577 0.018 3nr6-a2-m2-cB_3nr6-a2-m4-cB
65 6fiv-a1-m2-cA 112 86 0.2626 0.2321 0.3023 0.060 6fiv-a1-m1-cA_6fiv-a1-m2-cA
66 6fiv-a1-m1-cA 112 86 0.2626 0.2321 0.3023 0.060 6fiv-a1-m1-cA_6fiv-a1-m2-cA
67 3f1c-a1-m1-cB 230 27 0.1414 0.0609 0.5185 0.30 3f1c-a1-m1-cA_3f1c-a1-m1-cB
68 3f1c-a1-m1-cA 229 27 0.1414 0.0611 0.5185 0.31 3f1c-a1-m1-cA_3f1c-a1-m1-cB
69 4le1-a3-m2-cA 132 41 0.1414 0.1061 0.3415 1.3 4le1-a3-m1-cB_4le1-a3-m2-cA
70 4le1-a3-m1-cB 130 41 0.1414 0.1077 0.3415 1.5 4le1-a3-m1-cB_4le1-a3-m2-cA
71 4ldz-a1-m1-cB 188 41 0.1414 0.0745 0.3415 1.6 4ldz-a1-m1-cB_4ldz-a1-m1-cA
72 4ldz-a1-m1-cA 196 41 0.1414 0.0714 0.3415 1.6 4ldz-a1-m1-cB_4ldz-a1-m1-cA
73 4le2-a4-m1-cC 134 41 0.1414 0.1045 0.3415 1.7 4le2-a4-m2-cD_4le2-a4-m1-cC
74 8dtc-a1-m1-cB 374 37 0.1515 0.0401 0.4054 2.7 8dtc-a1-m1-cA_8dtc-a1-m1-cB
75 8dtc-a1-m1-cA 374 37 0.1515 0.0401 0.4054 2.7 8dtc-a1-m1-cA_8dtc-a1-m1-cB
76 7z8f-a1-m1-cf 4579 64 0.2323 0.0050 0.3594 4.5 7z8f-a1-m1-ce_7z8f-a1-m1-cf, 7z8f-a1-m1-cm_7z8f-a1-m1-cf
77 7z8f-a1-m1-ce 4579 64 0.2323 0.0050 0.3594 4.5 7z8f-a1-m1-ce_7z8f-a1-m1-cf
78 7z8f-a1-m1-cm 4562 64 0.2323 0.0050 0.3594 4.6 7z8f-a1-m1-cm_7z8f-a1-m1-cf, 7z8f-a1-m1-cm_7z8f-a1-m1-cn
79 7z8f-a1-m1-cn 4566 64 0.2323 0.0050 0.3594 4.6 7z8f-a1-m1-cm_7z8f-a1-m1-cn
80 4jis-a1-m1-cA 221 30 0.1313 0.0588 0.4333 4.8 4jis-a1-m1-cB_4jis-a1-m1-cA
81 4jis-a1-m1-cB 219 30 0.1313 0.0594 0.4333 5.1 4jis-a1-m1-cB_4jis-a1-m1-cA
82 3c8v-a2-m1-cC 455 53 0.1818 0.0396 0.3396 5.1 3c8v-a2-m1-cD_3c8v-a2-m1-cC
83 7xsg-a1-m2-cB 545 42 0.1111 0.0202 0.2619 5.7 7xsg-a1-m1-cA_7xsg-a1-m2-cB
84 7xsg-a1-m1-cA 545 42 0.1111 0.0202 0.2619 5.7 7xsg-a1-m1-cA_7xsg-a1-m2-cB
85 2rsp-a1-m1-cB 113 29 0.1414 0.1239 0.4828 7.7 2rsp-a1-m1-cB_2rsp-a1-m1-cA
86 2rsp-a1-m1-cA 115 21 0.1212 0.1043 0.5714 9.3 2rsp-a1-m1-cB_2rsp-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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