Home Research COVID-19 Services Publications People Teaching Job Opening News Forum
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

HomodimerDB
>protein (length=99)
PQITLWKRPLVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPKMIGGIGGFIKVRQYD
QIIIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Dimers
1 4mc2-a1-m1-cB 99 99 1.0000 1.0000 1.0000 9.41e-68 4mc2-a1-m1-cA_4mc2-a1-m1-cB
2 4mc2-a1-m1-cA 99 99 1.0000 1.0000 1.0000 9.41e-68 4mc2-a1-m1-cA_4mc2-a1-m1-cB
3 1ztz-a2-m2-cB 99 99 1.0000 1.0000 1.0000 9.41e-68 1ztz-a2-m1-cA_1ztz-a2-m2-cB, 1ztz-a2-m1-cB_1ztz-a2-m2-cB, 1ztz-a2-m2-cA_1ztz-a2-m2-cB
4 1ztz-a2-m2-cA 99 99 1.0000 1.0000 1.0000 9.41e-68 1ztz-a2-m2-cA_1ztz-a2-m2-cB
5 1ztz-a2-m1-cB 99 99 1.0000 1.0000 1.0000 9.41e-68 1ztz-a2-m1-cB_1ztz-a2-m2-cB
6 1ztz-a2-m1-cA 99 99 1.0000 1.0000 1.0000 9.41e-68 1ztz-a2-m1-cA_1ztz-a2-m2-cB
7 2f80-a2-m4-cB 99 99 0.9697 0.9697 0.9697 3.39e-65 2f80-a2-m1-cA_2f80-a2-m4-cB
8 2f80-a2-m1-cA 99 99 0.9697 0.9697 0.9697 3.39e-65 2f80-a2-m1-cA_2f80-a2-m4-cB
9 1kj4-a3-m4-cD 99 99 0.9293 0.9293 0.9293 4.99e-64 1kj4-a3-m3-cA_1kj4-a3-m4-cD, 1kj4-a3-m4-cA_1kj4-a3-m4-cD
10 1kj4-a3-m4-cC 99 99 0.9293 0.9293 0.9293 4.99e-64 1kj4-a3-m2-cB_1kj4-a3-m4-cC
11 1kj4-a3-m4-cB 99 99 0.9293 0.9293 0.9293 4.99e-64 1kj4-a3-m2-cB_1kj4-a3-m4-cB
12 1kj4-a3-m4-cA 99 99 0.9293 0.9293 0.9293 4.99e-64 1kj4-a3-m4-cA_1kj4-a3-m4-cD
13 1kj4-a3-m3-cA 99 99 0.9293 0.9293 0.9293 4.99e-64 1kj4-a3-m3-cA_1kj4-a3-m4-cD
14 1kj4-a3-m2-cB 99 99 0.9293 0.9293 0.9293 4.99e-64 1kj4-a3-m2-cB_1kj4-a3-m4-cB, 1kj4-a3-m2-cB_1kj4-a3-m4-cC
15 1mt9-a1-m1-cB 99 99 0.9192 0.9192 0.9192 1.37e-63 1mt9-a1-m1-cA_1mt9-a1-m1-cB
16 1mt9-a1-m1-cA 99 99 0.9192 0.9192 0.9192 1.37e-63 1mt9-a1-m1-cA_1mt9-a1-m1-cB
17 3oud-a1-m1-cA 99 99 0.8586 0.8586 0.8586 7.63e-61 3oud-a1-m1-cA_3oud-a1-m1-cB
18 6ogt-a1-m2-cA 99 99 0.8384 0.8384 0.8384 1.56e-60 6ogt-a1-m1-cA_6ogt-a1-m2-cA
19 6ogt-a1-m1-cA 99 99 0.8384 0.8384 0.8384 1.56e-60 6ogt-a1-m1-cA_6ogt-a1-m2-cA
20 3oud-a1-m1-cB 99 99 0.8485 0.8485 0.8485 2.70e-60 3oud-a1-m1-cA_3oud-a1-m1-cB
21 2rkg-a1-m1-cB 100 100 0.8485 0.8400 0.8400 3.75e-59 2rkg-a1-m1-cA_2rkg-a1-m1-cB
22 2rkg-a1-m1-cA 100 100 0.8485 0.8400 0.8400 3.75e-59 2rkg-a1-m1-cA_2rkg-a1-m1-cB
23 2p3c-a1-m1-cB 98 99 0.8586 0.8673 0.8586 1.34e-58 2p3c-a1-m1-cA_2p3c-a1-m1-cB
24 2p3c-a1-m1-cA 98 99 0.8586 0.8673 0.8586 1.34e-58 2p3c-a1-m1-cA_2p3c-a1-m1-cB
25 3u7s-a1-m1-cB 99 99 0.7879 0.7879 0.7879 5.65e-58 3u7s-a1-m1-cA_3u7s-a1-m1-cB
26 3u7s-a1-m1-cA 99 99 0.7879 0.7879 0.7879 5.65e-58 3u7s-a1-m1-cA_3u7s-a1-m1-cB
27 3ttp-a1-m1-cB 99 99 0.7879 0.7879 0.7879 9.79e-58 3ttp-a1-m1-cA_3ttp-a1-m1-cB
28 3ttp-a1-m1-cA 99 99 0.7879 0.7879 0.7879 9.79e-58 3ttp-a1-m1-cA_3ttp-a1-m1-cB
29 3ggu-a1-m1-cB 99 99 0.7879 0.7879 0.7879 3.53e-57 3ggu-a1-m1-cA_3ggu-a1-m1-cB
30 3ggu-a1-m1-cA 99 99 0.7879 0.7879 0.7879 3.53e-57 3ggu-a1-m1-cA_3ggu-a1-m1-cB
31 2azc-a2-m2-cB 99 99 0.9192 0.9192 0.9192 1.56e-56 2azc-a2-m1-cA_2azc-a2-m2-cB
32 2azc-a2-m2-cA 99 99 0.9192 0.9192 0.9192 1.56e-56 2azc-a2-m1-cA_2azc-a2-m2-cA
33 2azc-a2-m1-cA 99 99 0.9192 0.9192 0.9192 1.56e-56 2azc-a2-m1-cA_2azc-a2-m2-cA, 2azc-a2-m1-cA_2azc-a2-m2-cB
34 2p3d-a1-m1-cB 99 99 0.7778 0.7778 0.7778 5.09e-56 2p3d-a1-m1-cA_2p3d-a1-m1-cB
35 2p3d-a1-m1-cA 99 99 0.7778 0.7778 0.7778 5.09e-56 2p3d-a1-m1-cA_2p3d-a1-m1-cB
36 1k6c-a1-m1-cA 94 99 0.8788 0.9255 0.8788 1.17e-55 1k6c-a1-m1-cB_1k6c-a1-m1-cA
37 3t3c-a1-m1-cB 99 99 0.7677 0.7677 0.7677 1.43e-55 3t3c-a1-m1-cA_3t3c-a1-m1-cB
38 3t3c-a1-m1-cA 99 99 0.7677 0.7677 0.7677 1.43e-55 3t3c-a1-m1-cA_3t3c-a1-m1-cB
39 8dch-a1-m1-cB 99 99 0.7879 0.7879 0.7879 2.31e-55 8dch-a1-m1-cA_8dch-a1-m1-cB
40 8dch-a1-m1-cA 99 99 0.7879 0.7879 0.7879 2.31e-55 8dch-a1-m1-cA_8dch-a1-m1-cB
41 1k6c-a1-m1-cB 93 99 0.8889 0.9462 0.8889 1.03e-54 1k6c-a1-m1-cB_1k6c-a1-m1-cA
42 3mws-a1-m1-cB 99 99 0.7879 0.7879 0.7879 1.11e-54 3mws-a1-m1-cA_3mws-a1-m1-cB
43 3mws-a1-m1-cA 99 99 0.7879 0.7879 0.7879 1.11e-54 3mws-a1-m1-cA_3mws-a1-m1-cB
44 2b7z-a1-m1-cB 99 99 0.8889 0.8889 0.8889 1.48e-54 2b7z-a1-m1-cA_2b7z-a1-m1-cB
45 2b7z-a1-m1-cA 99 99 0.8889 0.8889 0.8889 1.48e-54 2b7z-a1-m1-cA_2b7z-a1-m1-cB
46 6p9a-a1-m1-cB 99 99 0.7576 0.7576 0.7576 2.37e-54 6p9a-a1-m1-cA_6p9a-a1-m1-cB
47 6p9a-a1-m1-cA 99 99 0.7576 0.7576 0.7576 2.37e-54 6p9a-a1-m1-cA_6p9a-a1-m1-cB
48 5b18-a2-m1-cD 99 99 0.7576 0.7576 0.7576 3.92e-48 5b18-a2-m1-cC_5b18-a2-m1-cD
49 5b18-a2-m1-cC 99 99 0.7576 0.7576 0.7576 3.92e-48 5b18-a2-m1-cC_5b18-a2-m1-cD
50 2sam-a1-m2-cA 99 99 0.5253 0.5253 0.5253 4.90e-34 2sam-a1-m1-cA_2sam-a1-m2-cA
51 2sam-a1-m1-cA 99 99 0.5253 0.5253 0.5253 4.90e-34 2sam-a1-m1-cA_2sam-a1-m2-cA
52 1bai-a1-m1-cB 124 90 0.4040 0.3226 0.4444 2.62e-08 1bai-a1-m1-cA_1bai-a1-m1-cB
53 1bai-a1-m1-cA 124 90 0.4040 0.3226 0.4444 2.62e-08 1bai-a1-m1-cA_1bai-a1-m1-cB
54 3nr6-a2-m4-cB 114 93 0.2626 0.2281 0.2796 3.83e-04 3nr6-a2-m2-cB_3nr6-a2-m4-cB, 3nr6-a2-m4-cB_3nr6-a2-m4-cA
55 3nr6-a2-m2-cB 114 93 0.2626 0.2281 0.2796 3.83e-04 3nr6-a2-m2-cB_3nr6-a2-m4-cB
56 3nr6-a2-m4-cA 120 96 0.2424 0.2000 0.2500 6.56e-04 3nr6-a2-m4-cB_3nr6-a2-m4-cA
57 6s1w-a1-m1-cB 108 94 0.2424 0.2222 0.2553 0.007 6s1w-a1-m1-cA_6s1w-a1-m1-cB
58 7bgt-a1-m1-cB 108 94 0.2626 0.2407 0.2766 0.008 7bgt-a1-m1-cA_7bgt-a1-m1-cB
59 7bgt-a1-m1-cA 108 94 0.2626 0.2407 0.2766 0.008 7bgt-a1-m1-cA_7bgt-a1-m1-cB
60 2hah-a1-m2-cA 112 106 0.3939 0.3482 0.3679 0.011 2hah-a1-m1-cA_2hah-a1-m2-cA
61 2hah-a1-m1-cA 112 106 0.3939 0.3482 0.3679 0.011 2hah-a1-m1-cA_2hah-a1-m2-cA
62 2fmb-a1-m2-cA 104 99 0.3131 0.2981 0.3131 0.012 2fmb-a1-m1-cA_2fmb-a1-m2-cA
63 2fmb-a1-m1-cA 104 99 0.3131 0.2981 0.3131 0.012 2fmb-a1-m1-cA_2fmb-a1-m2-cA
64 6s1w-a1-m1-cA 97 92 0.2323 0.2371 0.2500 0.030 6s1w-a1-m1-cA_6s1w-a1-m1-cB
65 6fiv-a1-m2-cA 112 68 0.2323 0.2054 0.3382 0.12 6fiv-a1-m1-cA_6fiv-a1-m2-cA
66 6fiv-a1-m1-cA 112 68 0.2323 0.2054 0.3382 0.12 6fiv-a1-m1-cA_6fiv-a1-m2-cA
67 2rsp-a1-m1-cA 115 29 0.1414 0.1217 0.4828 1.3 2rsp-a1-m1-cB_2rsp-a1-m1-cA
68 3f1c-a1-m1-cA 229 30 0.1414 0.0611 0.4667 1.6 3f1c-a1-m1-cA_3f1c-a1-m1-cB
69 3f1c-a1-m1-cB 230 30 0.1414 0.0609 0.4667 1.6 3f1c-a1-m1-cA_3f1c-a1-m1-cB
70 2rsp-a1-m1-cB 113 27 0.1515 0.1327 0.5556 1.8 2rsp-a1-m1-cB_2rsp-a1-m1-cA
71 5a9s-a1-m1-cB 282 56 0.1818 0.0638 0.3214 8.7 5a9s-a1-m1-cA_5a9s-a1-m1-cB
72 5a9s-a1-m1-cA 280 56 0.1818 0.0643 0.3214 8.7 5a9s-a1-m1-cA_5a9s-a1-m1-cB

[Back]
Reference:
Jacob Schwartz et al.

petefredumich.edu | 1150 W. Medical Center Dr., Ann Arbor, MI 48109-0600