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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=99)
PQITLWKRPLVTIKIGGQLKEALLDTGADNTVIEEMSLPGRWKPKMIGGIGGFIKVRQYD
QIIIEIAGHKAIGTVLVGPTPVNIIGRNLLTQIGATLNF

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2f80-a2-m4-cB 99 99 1.0000 1.0000 1.0000 7.84e-67 2f80-a2-m1-cA_2f80-a2-m4-cB
2 2f80-a2-m1-cA 99 99 1.0000 1.0000 1.0000 7.84e-67 2f80-a2-m1-cA_2f80-a2-m4-cB
3 4mc2-a1-m1-cB 99 99 0.9697 0.9697 0.9697 3.39e-65 4mc2-a1-m1-cA_4mc2-a1-m1-cB
4 4mc2-a1-m1-cA 99 99 0.9697 0.9697 0.9697 3.39e-65 4mc2-a1-m1-cA_4mc2-a1-m1-cB
5 1ztz-a2-m2-cB 99 99 0.9697 0.9697 0.9697 3.39e-65 1ztz-a2-m1-cA_1ztz-a2-m2-cB, 1ztz-a2-m1-cB_1ztz-a2-m2-cB, 1ztz-a2-m2-cA_1ztz-a2-m2-cB
6 1ztz-a2-m2-cA 99 99 0.9697 0.9697 0.9697 3.39e-65 1ztz-a2-m2-cA_1ztz-a2-m2-cB
7 1ztz-a2-m1-cB 99 99 0.9697 0.9697 0.9697 3.39e-65 1ztz-a2-m1-cB_1ztz-a2-m2-cB
8 1ztz-a2-m1-cA 99 99 0.9697 0.9697 0.9697 3.39e-65 1ztz-a2-m1-cA_1ztz-a2-m2-cB
9 1kj4-a3-m4-cD 99 99 0.8990 0.8990 0.8990 2.23e-61 1kj4-a3-m3-cA_1kj4-a3-m4-cD, 1kj4-a3-m4-cA_1kj4-a3-m4-cD
10 1kj4-a3-m4-cC 99 99 0.8990 0.8990 0.8990 2.23e-61 1kj4-a3-m2-cB_1kj4-a3-m4-cC
11 1kj4-a3-m4-cB 99 99 0.8990 0.8990 0.8990 2.23e-61 1kj4-a3-m2-cB_1kj4-a3-m4-cB
12 1kj4-a3-m4-cA 99 99 0.8990 0.8990 0.8990 2.23e-61 1kj4-a3-m4-cA_1kj4-a3-m4-cD
13 1kj4-a3-m3-cA 99 99 0.8990 0.8990 0.8990 2.23e-61 1kj4-a3-m3-cA_1kj4-a3-m4-cD
14 1kj4-a3-m2-cB 99 99 0.8990 0.8990 0.8990 2.23e-61 1kj4-a3-m2-cB_1kj4-a3-m4-cB, 1kj4-a3-m2-cB_1kj4-a3-m4-cC
15 1mt9-a1-m1-cB 99 99 0.8889 0.8889 0.8889 8.15e-61 1mt9-a1-m1-cA_1mt9-a1-m1-cB
16 1mt9-a1-m1-cA 99 99 0.8889 0.8889 0.8889 8.15e-61 1mt9-a1-m1-cA_1mt9-a1-m1-cB
17 3oud-a1-m1-cA 99 99 0.8283 0.8283 0.8283 3.81e-58 3oud-a1-m1-cA_3oud-a1-m1-cB
18 6ogt-a1-m2-cA 99 99 0.8081 0.8081 0.8081 5.53e-58 6ogt-a1-m1-cA_6ogt-a1-m2-cA
19 6ogt-a1-m1-cA 99 99 0.8081 0.8081 0.8081 5.53e-58 6ogt-a1-m1-cA_6ogt-a1-m2-cA
20 3oud-a1-m1-cB 99 99 0.8182 0.8182 0.8182 1.30e-57 3oud-a1-m1-cA_3oud-a1-m1-cB
21 2p3c-a1-m1-cB 98 99 0.8384 0.8469 0.8384 6.62e-57 2p3c-a1-m1-cA_2p3c-a1-m1-cB
22 2p3c-a1-m1-cA 98 99 0.8384 0.8469 0.8384 6.62e-57 2p3c-a1-m1-cA_2p3c-a1-m1-cB
23 2rkg-a1-m1-cB 100 100 0.8182 0.8100 0.8100 1.55e-56 2rkg-a1-m1-cA_2rkg-a1-m1-cB
24 2rkg-a1-m1-cA 100 100 0.8182 0.8100 0.8100 1.55e-56 2rkg-a1-m1-cA_2rkg-a1-m1-cB
25 8dch-a1-m1-cB 99 99 0.7879 0.7879 0.7879 1.96e-55 8dch-a1-m1-cA_8dch-a1-m1-cB
26 8dch-a1-m1-cA 99 99 0.7879 0.7879 0.7879 1.96e-55 8dch-a1-m1-cA_8dch-a1-m1-cB
27 3u7s-a1-m1-cB 99 99 0.7576 0.7576 0.7576 2.39e-55 3u7s-a1-m1-cA_3u7s-a1-m1-cB
28 3u7s-a1-m1-cA 99 99 0.7576 0.7576 0.7576 2.39e-55 3u7s-a1-m1-cA_3u7s-a1-m1-cB
29 3ttp-a1-m1-cB 99 99 0.7576 0.7576 0.7576 3.36e-55 3ttp-a1-m1-cA_3ttp-a1-m1-cB
30 3ttp-a1-m1-cA 99 99 0.7576 0.7576 0.7576 3.36e-55 3ttp-a1-m1-cA_3ttp-a1-m1-cB
31 6p9a-a1-m1-cB 99 99 0.7677 0.7677 0.7677 6.86e-55 6p9a-a1-m1-cA_6p9a-a1-m1-cB
32 6p9a-a1-m1-cA 99 99 0.7677 0.7677 0.7677 6.86e-55 6p9a-a1-m1-cA_6p9a-a1-m1-cB
33 3ggu-a1-m1-cB 99 99 0.7576 0.7576 0.7576 1.09e-54 3ggu-a1-m1-cA_3ggu-a1-m1-cB
34 3ggu-a1-m1-cA 99 99 0.7576 0.7576 0.7576 1.09e-54 3ggu-a1-m1-cA_3ggu-a1-m1-cB
35 3mws-a1-m1-cB 99 99 0.7879 0.7879 0.7879 1.14e-54 3mws-a1-m1-cA_3mws-a1-m1-cB
36 3mws-a1-m1-cA 99 99 0.7879 0.7879 0.7879 1.14e-54 3mws-a1-m1-cA_3mws-a1-m1-cB
37 2azc-a2-m2-cB 99 99 0.8889 0.8889 0.8889 7.75e-54 2azc-a2-m1-cA_2azc-a2-m2-cB
38 2azc-a2-m2-cA 99 99 0.8889 0.8889 0.8889 7.75e-54 2azc-a2-m1-cA_2azc-a2-m2-cA
39 2azc-a2-m1-cA 99 99 0.8889 0.8889 0.8889 7.75e-54 2azc-a2-m1-cA_2azc-a2-m2-cA, 2azc-a2-m1-cA_2azc-a2-m2-cB
40 2p3d-a1-m1-cB 99 99 0.7475 0.7475 0.7475 2.10e-53 2p3d-a1-m1-cA_2p3d-a1-m1-cB
41 2p3d-a1-m1-cA 99 99 0.7475 0.7475 0.7475 2.10e-53 2p3d-a1-m1-cA_2p3d-a1-m1-cB
42 1k6c-a1-m1-cA 94 99 0.8485 0.8936 0.8485 5.06e-53 1k6c-a1-m1-cB_1k6c-a1-m1-cA
43 3t3c-a1-m1-cB 99 99 0.7374 0.7374 0.7374 6.88e-53 3t3c-a1-m1-cA_3t3c-a1-m1-cB
44 3t3c-a1-m1-cA 99 99 0.7374 0.7374 0.7374 6.88e-53 3t3c-a1-m1-cA_3t3c-a1-m1-cB
45 1k6c-a1-m1-cB 93 99 0.8586 0.9140 0.8586 4.13e-52 1k6c-a1-m1-cB_1k6c-a1-m1-cA
46 2b7z-a1-m1-cB 99 99 0.8586 0.8586 0.8586 6.11e-52 2b7z-a1-m1-cA_2b7z-a1-m1-cB
47 2b7z-a1-m1-cA 99 99 0.8586 0.8586 0.8586 6.11e-52 2b7z-a1-m1-cA_2b7z-a1-m1-cB
48 5b18-a2-m1-cD 99 99 0.7273 0.7273 0.7273 2.45e-45 5b18-a2-m1-cC_5b18-a2-m1-cD
49 5b18-a2-m1-cC 99 99 0.7273 0.7273 0.7273 2.45e-45 5b18-a2-m1-cC_5b18-a2-m1-cD
50 2sam-a1-m2-cA 99 99 0.5152 0.5152 0.5152 6.36e-33 2sam-a1-m1-cA_2sam-a1-m2-cA
51 2sam-a1-m1-cA 99 99 0.5152 0.5152 0.5152 6.36e-33 2sam-a1-m1-cA_2sam-a1-m2-cA
52 1bai-a1-m1-cB 124 90 0.3939 0.3145 0.4333 4.36e-08 1bai-a1-m1-cA_1bai-a1-m1-cB
53 1bai-a1-m1-cA 124 90 0.3939 0.3145 0.4333 4.36e-08 1bai-a1-m1-cA_1bai-a1-m1-cB
54 3nr6-a2-m4-cB 114 93 0.2828 0.2456 0.3011 1.50e-05 3nr6-a2-m2-cB_3nr6-a2-m4-cB, 3nr6-a2-m4-cB_3nr6-a2-m4-cA
55 3nr6-a2-m2-cB 114 93 0.2828 0.2456 0.3011 1.50e-05 3nr6-a2-m2-cB_3nr6-a2-m4-cB
56 3nr6-a2-m4-cA 120 93 0.2828 0.2333 0.3011 3.69e-05 3nr6-a2-m4-cB_3nr6-a2-m4-cA
57 2fmb-a1-m2-cA 104 99 0.3232 0.3077 0.3232 0.002 2fmb-a1-m1-cA_2fmb-a1-m2-cA
58 2fmb-a1-m1-cA 104 99 0.3232 0.3077 0.3232 0.002 2fmb-a1-m1-cA_2fmb-a1-m2-cA
59 2hah-a1-m2-cA 112 106 0.3939 0.3482 0.3679 0.006 2hah-a1-m1-cA_2hah-a1-m2-cA
60 2hah-a1-m1-cA 112 106 0.3939 0.3482 0.3679 0.006 2hah-a1-m1-cA_2hah-a1-m2-cA
61 6s1w-a1-m1-cB 108 94 0.2626 0.2407 0.2766 0.007 6s1w-a1-m1-cA_6s1w-a1-m1-cB
62 7bgt-a1-m1-cB 108 94 0.2626 0.2407 0.2766 0.008 7bgt-a1-m1-cA_7bgt-a1-m1-cB
63 7bgt-a1-m1-cA 108 94 0.2626 0.2407 0.2766 0.008 7bgt-a1-m1-cA_7bgt-a1-m1-cB
64 6s1w-a1-m1-cA 97 92 0.2323 0.2371 0.2500 0.041 6s1w-a1-m1-cA_6s1w-a1-m1-cB
65 6fiv-a1-m2-cA 112 84 0.2525 0.2232 0.2976 0.13 6fiv-a1-m1-cA_6fiv-a1-m2-cA
66 6fiv-a1-m1-cA 112 84 0.2525 0.2232 0.2976 0.13 6fiv-a1-m1-cA_6fiv-a1-m2-cA
67 2rsp-a1-m1-cA 115 29 0.1414 0.1217 0.4828 1.1 2rsp-a1-m1-cB_2rsp-a1-m1-cA
68 2rsp-a1-m1-cB 113 27 0.1515 0.1327 0.5556 1.3 2rsp-a1-m1-cB_2rsp-a1-m1-cA
69 3c8v-a2-m1-cC 455 53 0.1717 0.0374 0.3208 5.5 3c8v-a2-m1-cD_3c8v-a2-m1-cC
70 6q9k-a2-m1-cD 418 86 0.2323 0.0550 0.2674 6.8 6q9k-a2-m1-cB_6q9k-a2-m1-cD
71 6q9k-a2-m1-cB 418 86 0.2323 0.0550 0.2674 6.8 6q9k-a2-m1-cB_6q9k-a2-m1-cD
72 3f1c-a1-m1-cA 229 30 0.1313 0.0568 0.4333 7.4 3f1c-a1-m1-cA_3f1c-a1-m1-cB
73 3f1c-a1-m1-cB 230 30 0.1313 0.0565 0.4333 7.6 3f1c-a1-m1-cA_3f1c-a1-m1-cB
74 5a9s-a1-m1-cB 282 72 0.2020 0.0709 0.2778 8.3 5a9s-a1-m1-cA_5a9s-a1-m1-cB
75 5a9s-a1-m1-cA 280 56 0.1818 0.0643 0.3214 8.5 5a9s-a1-m1-cA_5a9s-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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