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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=99)
PQITLWKRPLVTIRIGGQLKEALLNTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYD
QIPVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1kj4-a3-m4-cD 99 99 1.0000 1.0000 1.0000 4.66e-68 1kj4-a3-m3-cA_1kj4-a3-m4-cD, 1kj4-a3-m4-cA_1kj4-a3-m4-cD
2 1kj4-a3-m4-cC 99 99 1.0000 1.0000 1.0000 4.66e-68 1kj4-a3-m2-cB_1kj4-a3-m4-cC
3 1kj4-a3-m4-cB 99 99 1.0000 1.0000 1.0000 4.66e-68 1kj4-a3-m2-cB_1kj4-a3-m4-cB
4 1kj4-a3-m4-cA 99 99 1.0000 1.0000 1.0000 4.66e-68 1kj4-a3-m4-cA_1kj4-a3-m4-cD
5 1kj4-a3-m3-cA 99 99 1.0000 1.0000 1.0000 4.66e-68 1kj4-a3-m3-cA_1kj4-a3-m4-cD
6 1kj4-a3-m2-cB 99 99 1.0000 1.0000 1.0000 4.66e-68 1kj4-a3-m2-cB_1kj4-a3-m4-cB, 1kj4-a3-m2-cB_1kj4-a3-m4-cC
7 1mt9-a1-m1-cB 99 99 0.9899 0.9899 0.9899 1.53e-67 1mt9-a1-m1-cA_1mt9-a1-m1-cB
8 1mt9-a1-m1-cA 99 99 0.9899 0.9899 0.9899 1.53e-67 1mt9-a1-m1-cA_1mt9-a1-m1-cB
9 4mc2-a1-m1-cB 99 99 0.9293 0.9293 0.9293 4.99e-64 4mc2-a1-m1-cA_4mc2-a1-m1-cB
10 4mc2-a1-m1-cA 99 99 0.9293 0.9293 0.9293 4.99e-64 4mc2-a1-m1-cA_4mc2-a1-m1-cB
11 1ztz-a2-m2-cB 99 99 0.9293 0.9293 0.9293 4.99e-64 1ztz-a2-m1-cA_1ztz-a2-m2-cB, 1ztz-a2-m1-cB_1ztz-a2-m2-cB, 1ztz-a2-m2-cA_1ztz-a2-m2-cB
12 1ztz-a2-m2-cA 99 99 0.9293 0.9293 0.9293 4.99e-64 1ztz-a2-m2-cA_1ztz-a2-m2-cB
13 1ztz-a2-m1-cB 99 99 0.9293 0.9293 0.9293 4.99e-64 1ztz-a2-m1-cB_1ztz-a2-m2-cB
14 1ztz-a2-m1-cA 99 99 0.9293 0.9293 0.9293 4.99e-64 1ztz-a2-m1-cA_1ztz-a2-m2-cB
15 3oud-a1-m1-cA 99 99 0.8687 0.8687 0.8687 1.27e-62 3oud-a1-m1-cA_3oud-a1-m1-cB
16 3oud-a1-m1-cB 99 99 0.8586 0.8586 0.8586 4.69e-62 3oud-a1-m1-cA_3oud-a1-m1-cB
17 2f80-a2-m4-cB 99 99 0.8990 0.8990 0.8990 2.23e-61 2f80-a2-m1-cA_2f80-a2-m4-cB
18 2f80-a2-m1-cA 99 99 0.8990 0.8990 0.8990 2.23e-61 2f80-a2-m1-cA_2f80-a2-m4-cB
19 6ogt-a1-m2-cA 99 99 0.8182 0.8182 0.8182 4.31e-61 6ogt-a1-m1-cA_6ogt-a1-m2-cA
20 6ogt-a1-m1-cA 99 99 0.8182 0.8182 0.8182 4.31e-61 6ogt-a1-m1-cA_6ogt-a1-m2-cA
21 3u7s-a1-m1-cB 99 99 0.7677 0.7677 0.7677 3.23e-58 3u7s-a1-m1-cA_3u7s-a1-m1-cB
22 3u7s-a1-m1-cA 99 99 0.7677 0.7677 0.7677 3.23e-58 3u7s-a1-m1-cA_3u7s-a1-m1-cB
23 2p3c-a1-m1-cB 98 99 0.8586 0.8673 0.8586 7.79e-58 2p3c-a1-m1-cA_2p3c-a1-m1-cB
24 2p3c-a1-m1-cA 98 99 0.8586 0.8673 0.8586 7.79e-58 2p3c-a1-m1-cA_2p3c-a1-m1-cB
25 2azc-a2-m2-cB 99 99 0.9091 0.9091 0.9091 4.35e-57 2azc-a2-m1-cA_2azc-a2-m2-cB
26 2azc-a2-m2-cA 99 99 0.9091 0.9091 0.9091 4.35e-57 2azc-a2-m1-cA_2azc-a2-m2-cA
27 2azc-a2-m1-cA 99 99 0.9091 0.9091 0.9091 4.35e-57 2azc-a2-m1-cA_2azc-a2-m2-cA, 2azc-a2-m1-cA_2azc-a2-m2-cB
28 1k6c-a1-m1-cA 94 99 0.8889 0.9362 0.8889 4.70e-57 1k6c-a1-m1-cB_1k6c-a1-m1-cA
29 2rkg-a1-m1-cB 100 100 0.8283 0.8200 0.8200 7.12e-57 2rkg-a1-m1-cA_2rkg-a1-m1-cB
30 2rkg-a1-m1-cA 100 100 0.8283 0.8200 0.8200 7.12e-57 2rkg-a1-m1-cA_2rkg-a1-m1-cB
31 3ggu-a1-m1-cB 99 99 0.7576 0.7576 0.7576 9.60e-57 3ggu-a1-m1-cA_3ggu-a1-m1-cB
32 3ggu-a1-m1-cA 99 99 0.7576 0.7576 0.7576 9.60e-57 3ggu-a1-m1-cA_3ggu-a1-m1-cB
33 3ttp-a1-m1-cB 99 99 0.7778 0.7778 0.7778 1.14e-56 3ttp-a1-m1-cA_3ttp-a1-m1-cB
34 3ttp-a1-m1-cA 99 99 0.7778 0.7778 0.7778 1.14e-56 3ttp-a1-m1-cA_3ttp-a1-m1-cB
35 6p9a-a1-m1-cB 99 99 0.7778 0.7778 0.7778 5.74e-56 6p9a-a1-m1-cA_6p9a-a1-m1-cB
36 6p9a-a1-m1-cA 99 99 0.7778 0.7778 0.7778 5.74e-56 6p9a-a1-m1-cA_6p9a-a1-m1-cB
37 1k6c-a1-m1-cB 93 99 0.8889 0.9462 0.8889 1.09e-55 1k6c-a1-m1-cB_1k6c-a1-m1-cA
38 2p3d-a1-m1-cB 99 99 0.7778 0.7778 0.7778 1.20e-55 2p3d-a1-m1-cA_2p3d-a1-m1-cB
39 2p3d-a1-m1-cA 99 99 0.7778 0.7778 0.7778 1.20e-55 2p3d-a1-m1-cA_2p3d-a1-m1-cB
40 3t3c-a1-m1-cB 99 99 0.7576 0.7576 0.7576 6.86e-55 3t3c-a1-m1-cA_3t3c-a1-m1-cB
41 3t3c-a1-m1-cA 99 99 0.7576 0.7576 0.7576 6.86e-55 3t3c-a1-m1-cA_3t3c-a1-m1-cB
42 8dch-a1-m1-cB 99 99 0.7374 0.7374 0.7374 4.38e-54 8dch-a1-m1-cA_8dch-a1-m1-cB
43 8dch-a1-m1-cA 99 99 0.7374 0.7374 0.7374 4.38e-54 8dch-a1-m1-cA_8dch-a1-m1-cB
44 2b7z-a1-m1-cB 99 99 0.8485 0.8485 0.8485 1.23e-53 2b7z-a1-m1-cA_2b7z-a1-m1-cB
45 2b7z-a1-m1-cA 99 99 0.8485 0.8485 0.8485 1.23e-53 2b7z-a1-m1-cA_2b7z-a1-m1-cB
46 3mws-a1-m1-cB 99 99 0.7576 0.7576 0.7576 1.91e-53 3mws-a1-m1-cA_3mws-a1-m1-cB
47 3mws-a1-m1-cA 99 99 0.7576 0.7576 0.7576 1.91e-53 3mws-a1-m1-cA_3mws-a1-m1-cB
48 5b18-a2-m1-cD 99 99 0.7576 0.7576 0.7576 8.33e-50 5b18-a2-m1-cC_5b18-a2-m1-cD
49 5b18-a2-m1-cC 99 99 0.7576 0.7576 0.7576 8.33e-50 5b18-a2-m1-cC_5b18-a2-m1-cD
50 2sam-a1-m2-cA 99 99 0.5051 0.5051 0.5051 6.22e-33 2sam-a1-m1-cA_2sam-a1-m2-cA
51 2sam-a1-m1-cA 99 99 0.5051 0.5051 0.5051 6.22e-33 2sam-a1-m1-cA_2sam-a1-m2-cA
52 1bai-a1-m1-cB 124 90 0.3737 0.2984 0.4111 1.48e-07 1bai-a1-m1-cA_1bai-a1-m1-cB
53 1bai-a1-m1-cA 124 90 0.3737 0.2984 0.4111 1.48e-07 1bai-a1-m1-cA_1bai-a1-m1-cB
54 3nr6-a2-m4-cB 114 93 0.2626 0.2281 0.2796 0.002 3nr6-a2-m2-cB_3nr6-a2-m4-cB, 3nr6-a2-m4-cB_3nr6-a2-m4-cA
55 3nr6-a2-m2-cB 114 93 0.2626 0.2281 0.2796 0.002 3nr6-a2-m2-cB_3nr6-a2-m4-cB
56 3nr6-a2-m4-cA 120 93 0.2626 0.2167 0.2796 0.003 3nr6-a2-m4-cB_3nr6-a2-m4-cA
57 2hah-a1-m2-cA 112 106 0.4040 0.3571 0.3774 0.007 2hah-a1-m1-cA_2hah-a1-m2-cA
58 2hah-a1-m1-cA 112 106 0.4040 0.3571 0.3774 0.007 2hah-a1-m1-cA_2hah-a1-m2-cA
59 6s1w-a1-m1-cA 97 92 0.2323 0.2371 0.2500 0.011 6s1w-a1-m1-cA_6s1w-a1-m1-cB
60 6s1w-a1-m1-cB 108 96 0.2626 0.2407 0.2708 0.016 6s1w-a1-m1-cA_6s1w-a1-m1-cB
61 7bgt-a1-m1-cB 108 96 0.2626 0.2407 0.2708 0.017 7bgt-a1-m1-cA_7bgt-a1-m1-cB
62 7bgt-a1-m1-cA 108 96 0.2626 0.2407 0.2708 0.017 7bgt-a1-m1-cA_7bgt-a1-m1-cB
63 6fiv-a1-m2-cA 112 68 0.2424 0.2143 0.3529 0.067 6fiv-a1-m1-cA_6fiv-a1-m2-cA
64 6fiv-a1-m1-cA 112 68 0.2424 0.2143 0.3529 0.067 6fiv-a1-m1-cA_6fiv-a1-m2-cA
65 2fmb-a1-m2-cA 104 99 0.2929 0.2788 0.2929 0.14 2fmb-a1-m1-cA_2fmb-a1-m2-cA
66 2fmb-a1-m1-cA 104 99 0.2929 0.2788 0.2929 0.14 2fmb-a1-m1-cA_2fmb-a1-m2-cA
67 3f1c-a1-m1-cB 230 30 0.1414 0.0609 0.4667 0.99 3f1c-a1-m1-cA_3f1c-a1-m1-cB
68 3f1c-a1-m1-cA 229 30 0.1414 0.0611 0.4667 1.0 3f1c-a1-m1-cA_3f1c-a1-m1-cB
69 2rsp-a1-m1-cA 115 29 0.1212 0.1043 0.4138 3.0 2rsp-a1-m1-cB_2rsp-a1-m1-cA
70 6el1-a1-m1-cT 332 72 0.2222 0.0663 0.3056 3.9 6el1-a1-m1-cS_6el1-a1-m1-cT
71 6el1-a1-m1-cS 332 72 0.2222 0.0663 0.3056 3.9 6el1-a1-m1-cS_6el1-a1-m1-cT
72 2rsp-a1-m1-cB 113 27 0.1313 0.1150 0.4815 4.2 2rsp-a1-m1-cB_2rsp-a1-m1-cA
73 3c8v-a2-m1-cC 455 45 0.1616 0.0352 0.3556 7.3 3c8v-a2-m1-cD_3c8v-a2-m1-cC

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Reference:
Jacob Schwartz et al.

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