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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=99)
PQITLWQRPIITIKIGGQLKEAILNTGADDTIFEEMNLPGRWKPKIVGGVGGLVKVREYE
QIPIEICGRKVISTVLIGPTPFNIIGRNVMTQLGCTLNF

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5b18-a2-m1-cD 99 99 1.0000 1.0000 1.0000 2.22e-67 5b18-a2-m1-cC_5b18-a2-m1-cD
2 5b18-a2-m1-cC 99 99 1.0000 1.0000 1.0000 2.22e-67 5b18-a2-m1-cC_5b18-a2-m1-cD
3 3oud-a1-m1-cA 99 99 0.8081 0.8081 0.8081 6.72e-59 3oud-a1-m1-cA_3oud-a1-m1-cB
4 3oud-a1-m1-cB 99 99 0.8081 0.8081 0.8081 1.99e-58 3oud-a1-m1-cA_3oud-a1-m1-cB
5 3u7s-a1-m1-cB 99 99 0.7677 0.7677 0.7677 8.03e-58 3u7s-a1-m1-cA_3u7s-a1-m1-cB
6 3u7s-a1-m1-cA 99 99 0.7677 0.7677 0.7677 8.03e-58 3u7s-a1-m1-cA_3u7s-a1-m1-cB
7 1mt9-a1-m1-cB 99 99 0.7576 0.7576 0.7576 5.08e-57 1mt9-a1-m1-cA_1mt9-a1-m1-cB
8 1mt9-a1-m1-cA 99 99 0.7576 0.7576 0.7576 5.08e-57 1mt9-a1-m1-cA_1mt9-a1-m1-cB
9 1kj4-a3-m4-cD 99 99 0.7576 0.7576 0.7576 5.42e-57 1kj4-a3-m3-cA_1kj4-a3-m4-cD, 1kj4-a3-m4-cA_1kj4-a3-m4-cD
10 1kj4-a3-m4-cC 99 99 0.7576 0.7576 0.7576 5.42e-57 1kj4-a3-m2-cB_1kj4-a3-m4-cC
11 1kj4-a3-m4-cB 99 99 0.7576 0.7576 0.7576 5.42e-57 1kj4-a3-m2-cB_1kj4-a3-m4-cB
12 1kj4-a3-m4-cA 99 99 0.7576 0.7576 0.7576 5.42e-57 1kj4-a3-m4-cA_1kj4-a3-m4-cD
13 1kj4-a3-m3-cA 99 99 0.7576 0.7576 0.7576 5.42e-57 1kj4-a3-m3-cA_1kj4-a3-m4-cD
14 1kj4-a3-m2-cB 99 99 0.7576 0.7576 0.7576 5.42e-57 1kj4-a3-m2-cB_1kj4-a3-m4-cB, 1kj4-a3-m2-cB_1kj4-a3-m4-cC
15 3ggu-a1-m1-cB 99 99 0.7677 0.7677 0.7677 6.75e-57 3ggu-a1-m1-cA_3ggu-a1-m1-cB
16 3ggu-a1-m1-cA 99 99 0.7677 0.7677 0.7677 6.75e-57 3ggu-a1-m1-cA_3ggu-a1-m1-cB
17 6ogt-a1-m2-cA 99 99 0.7576 0.7576 0.7576 8.60e-57 6ogt-a1-m1-cA_6ogt-a1-m2-cA
18 6ogt-a1-m1-cA 99 99 0.7576 0.7576 0.7576 8.60e-57 6ogt-a1-m1-cA_6ogt-a1-m2-cA
19 3ttp-a1-m1-cB 99 99 0.7576 0.7576 0.7576 1.72e-55 3ttp-a1-m1-cA_3ttp-a1-m1-cB
20 3ttp-a1-m1-cA 99 99 0.7576 0.7576 0.7576 1.72e-55 3ttp-a1-m1-cA_3ttp-a1-m1-cB
21 4mc2-a1-m1-cB 99 99 0.7576 0.7576 0.7576 2.91e-55 4mc2-a1-m1-cA_4mc2-a1-m1-cB
22 4mc2-a1-m1-cA 99 99 0.7576 0.7576 0.7576 2.91e-55 4mc2-a1-m1-cA_4mc2-a1-m1-cB
23 1ztz-a2-m2-cB 99 99 0.7576 0.7576 0.7576 2.91e-55 1ztz-a2-m1-cA_1ztz-a2-m2-cB, 1ztz-a2-m1-cB_1ztz-a2-m2-cB, 1ztz-a2-m2-cA_1ztz-a2-m2-cB
24 1ztz-a2-m2-cA 99 99 0.7576 0.7576 0.7576 2.91e-55 1ztz-a2-m2-cA_1ztz-a2-m2-cB
25 1ztz-a2-m1-cB 99 99 0.7576 0.7576 0.7576 2.91e-55 1ztz-a2-m1-cB_1ztz-a2-m2-cB
26 1ztz-a2-m1-cA 99 99 0.7576 0.7576 0.7576 2.91e-55 1ztz-a2-m1-cA_1ztz-a2-m2-cB
27 2f80-a2-m4-cB 99 99 0.7273 0.7273 0.7273 1.81e-52 2f80-a2-m1-cA_2f80-a2-m4-cB
28 2f80-a2-m1-cA 99 99 0.7273 0.7273 0.7273 1.81e-52 2f80-a2-m1-cA_2f80-a2-m4-cB
29 2rkg-a1-m1-cB 100 100 0.7475 0.7400 0.7400 2.54e-52 2rkg-a1-m1-cA_2rkg-a1-m1-cB
30 2rkg-a1-m1-cA 100 100 0.7475 0.7400 0.7400 2.54e-52 2rkg-a1-m1-cA_2rkg-a1-m1-cB
31 2b7z-a1-m1-cB 99 99 0.7980 0.7980 0.7980 3.42e-52 2b7z-a1-m1-cA_2b7z-a1-m1-cB
32 2b7z-a1-m1-cA 99 99 0.7980 0.7980 0.7980 3.42e-52 2b7z-a1-m1-cA_2b7z-a1-m1-cB
33 2azc-a2-m2-cB 99 99 0.7980 0.7980 0.7980 2.75e-51 2azc-a2-m1-cA_2azc-a2-m2-cB
34 2azc-a2-m2-cA 99 99 0.7980 0.7980 0.7980 2.75e-51 2azc-a2-m1-cA_2azc-a2-m2-cA
35 2azc-a2-m1-cA 99 99 0.7980 0.7980 0.7980 2.75e-51 2azc-a2-m1-cA_2azc-a2-m2-cA, 2azc-a2-m1-cA_2azc-a2-m2-cB
36 6p9a-a1-m1-cB 99 99 0.6566 0.6566 0.6566 8.70e-51 6p9a-a1-m1-cA_6p9a-a1-m1-cB
37 6p9a-a1-m1-cA 99 99 0.6566 0.6566 0.6566 8.70e-51 6p9a-a1-m1-cA_6p9a-a1-m1-cB
38 8dch-a1-m1-cB 99 99 0.7071 0.7071 0.7071 1.39e-50 8dch-a1-m1-cA_8dch-a1-m1-cB
39 8dch-a1-m1-cA 99 99 0.7071 0.7071 0.7071 1.39e-50 8dch-a1-m1-cA_8dch-a1-m1-cB
40 2p3d-a1-m1-cB 99 99 0.6768 0.6768 0.6768 1.02e-49 2p3d-a1-m1-cA_2p3d-a1-m1-cB
41 2p3d-a1-m1-cA 99 99 0.6768 0.6768 0.6768 1.02e-49 2p3d-a1-m1-cA_2p3d-a1-m1-cB
42 3t3c-a1-m1-cB 99 99 0.6465 0.6465 0.6465 1.03e-49 3t3c-a1-m1-cA_3t3c-a1-m1-cB
43 3t3c-a1-m1-cA 99 99 0.6465 0.6465 0.6465 1.03e-49 3t3c-a1-m1-cA_3t3c-a1-m1-cB
44 2p3c-a1-m1-cB 98 99 0.6768 0.6837 0.6768 2.01e-49 2p3c-a1-m1-cA_2p3c-a1-m1-cB
45 2p3c-a1-m1-cA 98 99 0.6768 0.6837 0.6768 2.01e-49 2p3c-a1-m1-cA_2p3c-a1-m1-cB
46 1k6c-a1-m1-cA 94 99 0.7172 0.7553 0.7172 2.15e-48 1k6c-a1-m1-cB_1k6c-a1-m1-cA
47 3mws-a1-m1-cB 99 99 0.6465 0.6465 0.6465 9.85e-48 3mws-a1-m1-cA_3mws-a1-m1-cB
48 3mws-a1-m1-cA 99 99 0.6465 0.6465 0.6465 9.85e-48 3mws-a1-m1-cA_3mws-a1-m1-cB
49 1k6c-a1-m1-cB 93 99 0.7273 0.7742 0.7273 1.79e-47 1k6c-a1-m1-cB_1k6c-a1-m1-cA
50 2sam-a1-m2-cA 99 99 0.4747 0.4747 0.4747 9.93e-32 2sam-a1-m1-cA_2sam-a1-m2-cA
51 2sam-a1-m1-cA 99 99 0.4747 0.4747 0.4747 9.93e-32 2sam-a1-m1-cA_2sam-a1-m2-cA
52 1bai-a1-m1-cB 124 90 0.3131 0.2500 0.3444 3.65e-06 1bai-a1-m1-cA_1bai-a1-m1-cB
53 1bai-a1-m1-cA 124 90 0.3131 0.2500 0.3444 3.65e-06 1bai-a1-m1-cA_1bai-a1-m1-cB
54 3nr6-a2-m4-cB 114 92 0.2525 0.2193 0.2717 3.45e-04 3nr6-a2-m2-cB_3nr6-a2-m4-cB, 3nr6-a2-m4-cB_3nr6-a2-m4-cA
55 3nr6-a2-m2-cB 114 92 0.2525 0.2193 0.2717 3.45e-04 3nr6-a2-m2-cB_3nr6-a2-m4-cB
56 3nr6-a2-m4-cA 120 93 0.2525 0.2083 0.2688 6.91e-04 3nr6-a2-m4-cB_3nr6-a2-m4-cA
57 6s1w-a1-m1-cA 97 85 0.2222 0.2268 0.2588 0.008 6s1w-a1-m1-cA_6s1w-a1-m1-cB
58 6s1w-a1-m1-cB 108 94 0.2222 0.2037 0.2340 0.011 6s1w-a1-m1-cA_6s1w-a1-m1-cB
59 7bgt-a1-m1-cB 108 94 0.2222 0.2037 0.2340 0.014 7bgt-a1-m1-cA_7bgt-a1-m1-cB
60 7bgt-a1-m1-cA 108 94 0.2222 0.2037 0.2340 0.014 7bgt-a1-m1-cA_7bgt-a1-m1-cB
61 2hah-a1-m2-cA 112 108 0.3030 0.2679 0.2778 0.98 2hah-a1-m1-cA_2hah-a1-m2-cA
62 2hah-a1-m1-cA 112 108 0.3030 0.2679 0.2778 0.98 2hah-a1-m1-cA_2hah-a1-m2-cA
63 6fiv-a1-m2-cA 112 68 0.2323 0.2054 0.3382 2.0 6fiv-a1-m1-cA_6fiv-a1-m2-cA
64 6fiv-a1-m1-cA 112 68 0.2323 0.2054 0.3382 2.0 6fiv-a1-m1-cA_6fiv-a1-m2-cA

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Reference:
Jacob Schwartz et al.

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