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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=99)
PQITLWQRPIVTIKIGGQLKEALLNTGADDTTLEEVNLPGRWKPKLIGGIGGFVKVRQYD
QVPIEICGHKVIGTVLVGPTPTNVIGRNLMTQIGCTLNF

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3oud-a1-m1-cB 99 99 1.0000 1.0000 1.0000 1.23e-67 3oud-a1-m1-cA_3oud-a1-m1-cB
2 3oud-a1-m1-cA 99 99 0.9899 0.9899 0.9899 6.22e-67 3oud-a1-m1-cA_3oud-a1-m1-cB
3 1mt9-a1-m1-cB 99 99 0.8586 0.8586 0.8586 3.27e-62 1mt9-a1-m1-cA_1mt9-a1-m1-cB
4 1mt9-a1-m1-cA 99 99 0.8586 0.8586 0.8586 3.27e-62 1mt9-a1-m1-cA_1mt9-a1-m1-cB
5 1kj4-a3-m4-cD 99 99 0.8586 0.8586 0.8586 4.69e-62 1kj4-a3-m3-cA_1kj4-a3-m4-cD, 1kj4-a3-m4-cA_1kj4-a3-m4-cD
6 1kj4-a3-m4-cC 99 99 0.8586 0.8586 0.8586 4.69e-62 1kj4-a3-m2-cB_1kj4-a3-m4-cC
7 1kj4-a3-m4-cB 99 99 0.8586 0.8586 0.8586 4.69e-62 1kj4-a3-m2-cB_1kj4-a3-m4-cB
8 1kj4-a3-m4-cA 99 99 0.8586 0.8586 0.8586 4.69e-62 1kj4-a3-m4-cA_1kj4-a3-m4-cD
9 1kj4-a3-m3-cA 99 99 0.8586 0.8586 0.8586 4.69e-62 1kj4-a3-m3-cA_1kj4-a3-m4-cD
10 1kj4-a3-m2-cB 99 99 0.8586 0.8586 0.8586 4.69e-62 1kj4-a3-m2-cB_1kj4-a3-m4-cB, 1kj4-a3-m2-cB_1kj4-a3-m4-cC
11 6ogt-a1-m2-cA 99 99 0.8586 0.8586 0.8586 2.23e-61 6ogt-a1-m1-cA_6ogt-a1-m2-cA
12 6ogt-a1-m1-cA 99 99 0.8586 0.8586 0.8586 2.23e-61 6ogt-a1-m1-cA_6ogt-a1-m2-cA
13 3ggu-a1-m1-cB 99 99 0.8687 0.8687 0.8687 2.29e-60 3ggu-a1-m1-cA_3ggu-a1-m1-cB
14 3ggu-a1-m1-cA 99 99 0.8687 0.8687 0.8687 2.29e-60 3ggu-a1-m1-cA_3ggu-a1-m1-cB
15 4mc2-a1-m1-cB 99 99 0.8485 0.8485 0.8485 2.70e-60 4mc2-a1-m1-cA_4mc2-a1-m1-cB
16 4mc2-a1-m1-cA 99 99 0.8485 0.8485 0.8485 2.70e-60 4mc2-a1-m1-cA_4mc2-a1-m1-cB
17 1ztz-a2-m2-cB 99 99 0.8485 0.8485 0.8485 2.70e-60 1ztz-a2-m1-cA_1ztz-a2-m2-cB, 1ztz-a2-m1-cB_1ztz-a2-m2-cB, 1ztz-a2-m2-cA_1ztz-a2-m2-cB
18 1ztz-a2-m2-cA 99 99 0.8485 0.8485 0.8485 2.70e-60 1ztz-a2-m2-cA_1ztz-a2-m2-cB
19 1ztz-a2-m1-cB 99 99 0.8485 0.8485 0.8485 2.70e-60 1ztz-a2-m1-cB_1ztz-a2-m2-cB
20 1ztz-a2-m1-cA 99 99 0.8485 0.8485 0.8485 2.70e-60 1ztz-a2-m1-cA_1ztz-a2-m2-cB
21 3u7s-a1-m1-cB 99 99 0.8182 0.8182 0.8182 9.98e-59 3u7s-a1-m1-cA_3u7s-a1-m1-cB
22 3u7s-a1-m1-cA 99 99 0.8182 0.8182 0.8182 9.98e-59 3u7s-a1-m1-cA_3u7s-a1-m1-cB
23 2f80-a2-m4-cB 99 99 0.8182 0.8182 0.8182 1.30e-57 2f80-a2-m1-cA_2f80-a2-m4-cB
24 2f80-a2-m1-cA 99 99 0.8182 0.8182 0.8182 1.30e-57 2f80-a2-m1-cA_2f80-a2-m4-cB
25 2rkg-a1-m1-cB 100 100 0.8182 0.8100 0.8100 1.52e-56 2rkg-a1-m1-cA_2rkg-a1-m1-cB
26 2rkg-a1-m1-cA 100 100 0.8182 0.8100 0.8100 1.52e-56 2rkg-a1-m1-cA_2rkg-a1-m1-cB
27 3ttp-a1-m1-cB 99 99 0.7778 0.7778 0.7778 5.43e-56 3ttp-a1-m1-cA_3ttp-a1-m1-cB
28 3ttp-a1-m1-cA 99 99 0.7778 0.7778 0.7778 5.43e-56 3ttp-a1-m1-cA_3ttp-a1-m1-cB
29 2b7z-a1-m1-cB 99 99 0.8889 0.8889 0.8889 1.10e-55 2b7z-a1-m1-cA_2b7z-a1-m1-cB
30 2b7z-a1-m1-cA 99 99 0.8889 0.8889 0.8889 1.10e-55 2b7z-a1-m1-cA_2b7z-a1-m1-cB
31 6p9a-a1-m1-cB 99 99 0.7879 0.7879 0.7879 1.27e-55 6p9a-a1-m1-cA_6p9a-a1-m1-cB
32 6p9a-a1-m1-cA 99 99 0.7879 0.7879 0.7879 1.27e-55 6p9a-a1-m1-cA_6p9a-a1-m1-cB
33 2azc-a2-m2-cB 99 99 0.8485 0.8485 0.8485 1.51e-54 2azc-a2-m1-cA_2azc-a2-m2-cB
34 2azc-a2-m2-cA 99 99 0.8485 0.8485 0.8485 1.51e-54 2azc-a2-m1-cA_2azc-a2-m2-cA
35 2azc-a2-m1-cA 99 99 0.8485 0.8485 0.8485 1.51e-54 2azc-a2-m1-cA_2azc-a2-m2-cA, 2azc-a2-m1-cA_2azc-a2-m2-cB
36 8dch-a1-m1-cB 99 99 0.7677 0.7677 0.7677 1.74e-54 8dch-a1-m1-cA_8dch-a1-m1-cB
37 8dch-a1-m1-cA 99 99 0.7677 0.7677 0.7677 1.74e-54 8dch-a1-m1-cA_8dch-a1-m1-cB
38 2p3c-a1-m1-cB 98 99 0.7778 0.7857 0.7778 2.35e-54 2p3c-a1-m1-cA_2p3c-a1-m1-cB
39 2p3c-a1-m1-cA 98 99 0.7778 0.7857 0.7778 2.35e-54 2p3c-a1-m1-cA_2p3c-a1-m1-cB
40 2p3d-a1-m1-cB 99 99 0.7475 0.7475 0.7475 2.59e-54 2p3d-a1-m1-cA_2p3d-a1-m1-cB
41 2p3d-a1-m1-cA 99 99 0.7475 0.7475 0.7475 2.59e-54 2p3d-a1-m1-cA_2p3d-a1-m1-cB
42 3t3c-a1-m1-cB 99 99 0.7475 0.7475 0.7475 2.82e-54 3t3c-a1-m1-cA_3t3c-a1-m1-cB
43 3t3c-a1-m1-cA 99 99 0.7475 0.7475 0.7475 2.82e-54 3t3c-a1-m1-cA_3t3c-a1-m1-cB
44 1k6c-a1-m1-cA 94 99 0.8283 0.8723 0.8283 5.70e-54 1k6c-a1-m1-cB_1k6c-a1-m1-cA
45 1k6c-a1-m1-cB 93 99 0.8283 0.8817 0.8283 5.42e-53 1k6c-a1-m1-cB_1k6c-a1-m1-cA
46 3mws-a1-m1-cB 99 99 0.7172 0.7172 0.7172 1.64e-51 3mws-a1-m1-cA_3mws-a1-m1-cB
47 3mws-a1-m1-cA 99 99 0.7172 0.7172 0.7172 1.64e-51 3mws-a1-m1-cA_3mws-a1-m1-cB
48 5b18-a2-m1-cD 99 99 0.8081 0.8081 0.8081 3.90e-51 5b18-a2-m1-cC_5b18-a2-m1-cD
49 5b18-a2-m1-cC 99 99 0.8081 0.8081 0.8081 3.90e-51 5b18-a2-m1-cC_5b18-a2-m1-cD
50 2sam-a1-m2-cA 99 99 0.4848 0.4848 0.4848 3.75e-32 2sam-a1-m1-cA_2sam-a1-m2-cA
51 2sam-a1-m1-cA 99 99 0.4848 0.4848 0.4848 3.75e-32 2sam-a1-m1-cA_2sam-a1-m2-cA
52 1bai-a1-m1-cB 124 90 0.3232 0.2581 0.3556 3.78e-05 1bai-a1-m1-cA_1bai-a1-m1-cB
53 1bai-a1-m1-cA 124 90 0.3232 0.2581 0.3556 3.78e-05 1bai-a1-m1-cA_1bai-a1-m1-cB
54 3nr6-a2-m4-cB 114 93 0.2525 0.2193 0.2688 0.006 3nr6-a2-m2-cB_3nr6-a2-m4-cB, 3nr6-a2-m4-cB_3nr6-a2-m4-cA
55 3nr6-a2-m2-cB 114 93 0.2525 0.2193 0.2688 0.006 3nr6-a2-m2-cB_3nr6-a2-m4-cB
56 3nr6-a2-m4-cA 120 93 0.2525 0.2083 0.2688 0.013 3nr6-a2-m4-cB_3nr6-a2-m4-cA
57 6s1w-a1-m1-cA 97 92 0.2222 0.2268 0.2391 0.074 6s1w-a1-m1-cA_6s1w-a1-m1-cB
58 6s1w-a1-m1-cB 108 94 0.2222 0.2037 0.2340 0.11 6s1w-a1-m1-cA_6s1w-a1-m1-cB
59 7bgt-a1-m1-cB 108 98 0.2222 0.2037 0.2245 0.14 7bgt-a1-m1-cA_7bgt-a1-m1-cB
60 7bgt-a1-m1-cA 108 98 0.2222 0.2037 0.2245 0.14 7bgt-a1-m1-cA_7bgt-a1-m1-cB
61 2hah-a1-m2-cA 112 106 0.3535 0.3125 0.3302 0.50 2hah-a1-m1-cA_2hah-a1-m2-cA
62 2hah-a1-m1-cA 112 106 0.3535 0.3125 0.3302 0.50 2hah-a1-m1-cA_2hah-a1-m2-cA
63 2fmb-a1-m2-cA 104 99 0.2727 0.2596 0.2727 1.3 2fmb-a1-m1-cA_2fmb-a1-m2-cA
64 2fmb-a1-m1-cA 104 99 0.2727 0.2596 0.2727 1.3 2fmb-a1-m1-cA_2fmb-a1-m2-cA
65 6fiv-a1-m2-cA 112 68 0.2222 0.1964 0.3235 3.8 6fiv-a1-m1-cA_6fiv-a1-m2-cA
66 6fiv-a1-m1-cA 112 68 0.2222 0.1964 0.3235 3.8 6fiv-a1-m1-cA_6fiv-a1-m2-cA
67 2inr-a1-m2-cA 442 24 0.1212 0.0271 0.5000 6.1 2inr-a1-m1-cA_2inr-a1-m2-cA
68 2inr-a1-m1-cA 442 24 0.1212 0.0271 0.5000 6.1 2inr-a1-m1-cA_2inr-a1-m2-cA

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Reference:
Jacob Schwartz et al.

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