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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=99)
PQITLWQRPIVTIKVGGQLREALIDTGADDTIFEEINLPGRWKPKLIGGIGGFMKVRQYD
QIPIEICGHQAIGTVLVGPTPINVIGRNMLTQIGCTLNF

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 6ogt-a1-m2-cA 99 99 1.0000 1.0000 1.0000 4.27e-68 6ogt-a1-m1-cA_6ogt-a1-m2-cA
2 6ogt-a1-m1-cA 99 99 1.0000 1.0000 1.0000 4.27e-68 6ogt-a1-m1-cA_6ogt-a1-m2-cA
3 3oud-a1-m1-cA 99 99 0.8586 0.8586 0.8586 7.20e-62 3oud-a1-m1-cA_3oud-a1-m1-cB
4 3oud-a1-m1-cB 99 99 0.8586 0.8586 0.8586 2.23e-61 3oud-a1-m1-cA_3oud-a1-m1-cB
5 1kj4-a3-m4-cD 99 99 0.8182 0.8182 0.8182 4.31e-61 1kj4-a3-m3-cA_1kj4-a3-m4-cD, 1kj4-a3-m4-cA_1kj4-a3-m4-cD
6 1kj4-a3-m4-cC 99 99 0.8182 0.8182 0.8182 4.31e-61 1kj4-a3-m2-cB_1kj4-a3-m4-cC
7 1kj4-a3-m4-cB 99 99 0.8182 0.8182 0.8182 4.31e-61 1kj4-a3-m2-cB_1kj4-a3-m4-cB
8 1kj4-a3-m4-cA 99 99 0.8182 0.8182 0.8182 4.31e-61 1kj4-a3-m4-cA_1kj4-a3-m4-cD
9 1kj4-a3-m3-cA 99 99 0.8182 0.8182 0.8182 4.31e-61 1kj4-a3-m3-cA_1kj4-a3-m4-cD
10 1kj4-a3-m2-cB 99 99 0.8182 0.8182 0.8182 4.31e-61 1kj4-a3-m2-cB_1kj4-a3-m4-cB, 1kj4-a3-m2-cB_1kj4-a3-m4-cC
11 1mt9-a1-m1-cB 99 99 0.8182 0.8182 0.8182 1.24e-60 1mt9-a1-m1-cA_1mt9-a1-m1-cB
12 1mt9-a1-m1-cA 99 99 0.8182 0.8182 0.8182 1.24e-60 1mt9-a1-m1-cA_1mt9-a1-m1-cB
13 4mc2-a1-m1-cB 99 99 0.8384 0.8384 0.8384 1.56e-60 4mc2-a1-m1-cA_4mc2-a1-m1-cB
14 4mc2-a1-m1-cA 99 99 0.8384 0.8384 0.8384 1.56e-60 4mc2-a1-m1-cA_4mc2-a1-m1-cB
15 1ztz-a2-m2-cB 99 99 0.8384 0.8384 0.8384 1.56e-60 1ztz-a2-m1-cA_1ztz-a2-m2-cB, 1ztz-a2-m1-cB_1ztz-a2-m2-cB, 1ztz-a2-m2-cA_1ztz-a2-m2-cB
16 1ztz-a2-m2-cA 99 99 0.8384 0.8384 0.8384 1.56e-60 1ztz-a2-m2-cA_1ztz-a2-m2-cB
17 1ztz-a2-m1-cB 99 99 0.8384 0.8384 0.8384 1.56e-60 1ztz-a2-m1-cB_1ztz-a2-m2-cB
18 1ztz-a2-m1-cA 99 99 0.8384 0.8384 0.8384 1.56e-60 1ztz-a2-m1-cA_1ztz-a2-m2-cB
19 3u7s-a1-m1-cB 99 99 0.8081 0.8081 0.8081 1.51e-59 3u7s-a1-m1-cA_3u7s-a1-m1-cB
20 3u7s-a1-m1-cA 99 99 0.8081 0.8081 0.8081 1.51e-59 3u7s-a1-m1-cA_3u7s-a1-m1-cB
21 3ttp-a1-m1-cB 99 99 0.7980 0.7980 0.7980 1.62e-58 3ttp-a1-m1-cA_3ttp-a1-m1-cB
22 3ttp-a1-m1-cA 99 99 0.7980 0.7980 0.7980 1.62e-58 3ttp-a1-m1-cA_3ttp-a1-m1-cB
23 3ggu-a1-m1-cB 99 99 0.7980 0.7980 0.7980 3.02e-58 3ggu-a1-m1-cA_3ggu-a1-m1-cB
24 3ggu-a1-m1-cA 99 99 0.7980 0.7980 0.7980 3.02e-58 3ggu-a1-m1-cA_3ggu-a1-m1-cB
25 2f80-a2-m4-cB 99 99 0.8081 0.8081 0.8081 5.53e-58 2f80-a2-m1-cA_2f80-a2-m4-cB
26 2f80-a2-m1-cA 99 99 0.8081 0.8081 0.8081 5.53e-58 2f80-a2-m1-cA_2f80-a2-m4-cB
27 2rkg-a1-m1-cB 100 100 0.8081 0.8000 0.8000 2.23e-56 2rkg-a1-m1-cA_2rkg-a1-m1-cB
28 2rkg-a1-m1-cA 100 100 0.8081 0.8000 0.8000 2.23e-56 2rkg-a1-m1-cA_2rkg-a1-m1-cB
29 2p3d-a1-m1-cB 99 99 0.7980 0.7980 0.7980 3.24e-56 2p3d-a1-m1-cA_2p3d-a1-m1-cB
30 2p3d-a1-m1-cA 99 99 0.7980 0.7980 0.7980 3.24e-56 2p3d-a1-m1-cA_2p3d-a1-m1-cB
31 2b7z-a1-m1-cB 99 99 0.8889 0.8889 0.8889 4.92e-56 2b7z-a1-m1-cA_2b7z-a1-m1-cB
32 2b7z-a1-m1-cA 99 99 0.8889 0.8889 0.8889 4.92e-56 2b7z-a1-m1-cA_2b7z-a1-m1-cB
33 2p3c-a1-m1-cB 98 99 0.7879 0.7959 0.7879 8.73e-56 2p3c-a1-m1-cA_2p3c-a1-m1-cB
34 2p3c-a1-m1-cA 98 99 0.7879 0.7959 0.7879 8.73e-56 2p3c-a1-m1-cA_2p3c-a1-m1-cB
35 2azc-a2-m2-cB 99 99 0.8485 0.8485 0.8485 2.95e-55 2azc-a2-m1-cA_2azc-a2-m2-cB
36 2azc-a2-m2-cA 99 99 0.8485 0.8485 0.8485 2.95e-55 2azc-a2-m1-cA_2azc-a2-m2-cA
37 2azc-a2-m1-cA 99 99 0.8485 0.8485 0.8485 2.95e-55 2azc-a2-m1-cA_2azc-a2-m2-cA, 2azc-a2-m1-cA_2azc-a2-m2-cB
38 6p9a-a1-m1-cB 99 99 0.7374 0.7374 0.7374 1.60e-54 6p9a-a1-m1-cA_6p9a-a1-m1-cB
39 6p9a-a1-m1-cA 99 99 0.7374 0.7374 0.7374 1.60e-54 6p9a-a1-m1-cA_6p9a-a1-m1-cB
40 8dch-a1-m1-cB 99 99 0.7576 0.7576 0.7576 2.95e-54 8dch-a1-m1-cA_8dch-a1-m1-cB
41 8dch-a1-m1-cA 99 99 0.7576 0.7576 0.7576 2.95e-54 8dch-a1-m1-cA_8dch-a1-m1-cB
42 3t3c-a1-m1-cB 99 99 0.7374 0.7374 0.7374 2.86e-53 3t3c-a1-m1-cA_3t3c-a1-m1-cB
43 3t3c-a1-m1-cA 99 99 0.7374 0.7374 0.7374 2.86e-53 3t3c-a1-m1-cA_3t3c-a1-m1-cB
44 1k6c-a1-m1-cA 94 99 0.7980 0.8404 0.7980 4.34e-53 1k6c-a1-m1-cB_1k6c-a1-m1-cA
45 3mws-a1-m1-cB 99 99 0.7273 0.7273 0.7273 8.96e-53 3mws-a1-m1-cA_3mws-a1-m1-cB
46 3mws-a1-m1-cA 99 99 0.7273 0.7273 0.7273 8.96e-53 3mws-a1-m1-cA_3mws-a1-m1-cB
47 1k6c-a1-m1-cB 93 99 0.8081 0.8602 0.8081 3.14e-52 1k6c-a1-m1-cB_1k6c-a1-m1-cA
48 5b18-a2-m1-cD 99 99 0.7576 0.7576 0.7576 6.69e-50 5b18-a2-m1-cC_5b18-a2-m1-cD
49 5b18-a2-m1-cC 99 99 0.7576 0.7576 0.7576 6.69e-50 5b18-a2-m1-cC_5b18-a2-m1-cD
50 2sam-a1-m2-cA 99 99 0.4949 0.4949 0.4949 1.45e-32 2sam-a1-m1-cA_2sam-a1-m2-cA
51 2sam-a1-m1-cA 99 99 0.4949 0.4949 0.4949 1.45e-32 2sam-a1-m1-cA_2sam-a1-m2-cA
52 1bai-a1-m1-cB 124 90 0.3333 0.2661 0.3667 3.05e-06 1bai-a1-m1-cA_1bai-a1-m1-cB
53 1bai-a1-m1-cA 124 90 0.3333 0.2661 0.3667 3.05e-06 1bai-a1-m1-cA_1bai-a1-m1-cB
54 3nr6-a2-m4-cB 114 93 0.2424 0.2105 0.2581 0.004 3nr6-a2-m2-cB_3nr6-a2-m4-cB, 3nr6-a2-m4-cB_3nr6-a2-m4-cA
55 3nr6-a2-m2-cB 114 93 0.2424 0.2105 0.2581 0.004 3nr6-a2-m2-cB_3nr6-a2-m4-cB
56 3nr6-a2-m4-cA 120 93 0.2424 0.2000 0.2581 0.008 3nr6-a2-m4-cB_3nr6-a2-m4-cA
57 6s1w-a1-m1-cA 97 92 0.2323 0.2371 0.2500 0.023 6s1w-a1-m1-cA_6s1w-a1-m1-cB
58 6s1w-a1-m1-cB 108 94 0.2424 0.2222 0.2553 0.036 6s1w-a1-m1-cA_6s1w-a1-m1-cB
59 7bgt-a1-m1-cB 108 94 0.2424 0.2222 0.2553 0.046 7bgt-a1-m1-cA_7bgt-a1-m1-cB
60 7bgt-a1-m1-cA 108 94 0.2424 0.2222 0.2553 0.046 7bgt-a1-m1-cA_7bgt-a1-m1-cB
61 2fmb-a1-m2-cA 104 99 0.2525 0.2404 0.2525 0.11 2fmb-a1-m1-cA_2fmb-a1-m2-cA
62 2fmb-a1-m1-cA 104 99 0.2525 0.2404 0.2525 0.11 2fmb-a1-m1-cA_2fmb-a1-m2-cA
63 6fiv-a1-m2-cA 112 68 0.2424 0.2143 0.3529 0.31 6fiv-a1-m1-cA_6fiv-a1-m2-cA
64 6fiv-a1-m1-cA 112 68 0.2424 0.2143 0.3529 0.31 6fiv-a1-m1-cA_6fiv-a1-m2-cA
65 2hah-a1-m2-cA 112 106 0.3333 0.2946 0.3113 0.83 2hah-a1-m1-cA_2hah-a1-m2-cA
66 2hah-a1-m1-cA 112 106 0.3333 0.2946 0.3113 0.83 2hah-a1-m1-cA_2hah-a1-m2-cA
67 2rsp-a1-m1-cA 115 29 0.1313 0.1130 0.4483 4.6 2rsp-a1-m1-cB_2rsp-a1-m1-cA
68 2rsp-a1-m1-cB 113 21 0.1111 0.0973 0.5238 5.2 2rsp-a1-m1-cB_2rsp-a1-m1-cA
69 7ed2-a1-m1-cB 221 26 0.1010 0.0452 0.3846 7.6 7ed2-a1-m1-cA_7ed2-a1-m1-cB
70 7ed2-a1-m1-cA 221 26 0.1010 0.0452 0.3846 7.6 7ed2-a1-m1-cA_7ed2-a1-m1-cB
71 3c8v-a2-m1-cC 455 45 0.1717 0.0374 0.3778 8.5 3c8v-a2-m1-cD_3c8v-a2-m1-cC
72 6u1v-a1-m1-cB 389 37 0.1414 0.0360 0.3784 9.3 6u1v-a1-m1-cD_6u1v-a1-m1-cB
73 6u1v-a1-m1-cC 383 37 0.1414 0.0366 0.3784 9.6 6u1v-a1-m1-cD_6u1v-a1-m1-cC
74 6u1v-a1-m1-cD 382 37 0.1414 0.0366 0.3784 9.8 6u1v-a1-m1-cD_6u1v-a1-m1-cB, 6u1v-a1-m1-cD_6u1v-a1-m1-cC

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Reference:
Jacob Schwartz et al.

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