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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=99)
PQITLWQRPIVTVKIEGQLKEALLDTGADDTVFEELTLSGRWKPRLIGGIGGFVRVRQYD
QVPIEICGHKVIDTVLVGPTPTNVIGRNVMTQLGCTLNF

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3ggu-a1-m1-cB 99 99 1.0000 1.0000 1.0000 1.23e-68 3ggu-a1-m1-cA_3ggu-a1-m1-cB
2 3ggu-a1-m1-cA 99 99 1.0000 1.0000 1.0000 1.23e-68 3ggu-a1-m1-cA_3ggu-a1-m1-cB
3 3oud-a1-m1-cA 99 99 0.8788 0.8788 0.8788 6.69e-61 3oud-a1-m1-cA_3oud-a1-m1-cB
4 3oud-a1-m1-cB 99 99 0.8687 0.8687 0.8687 2.29e-60 3oud-a1-m1-cA_3oud-a1-m1-cB
5 6ogt-a1-m2-cA 99 99 0.7980 0.7980 0.7980 3.02e-58 6ogt-a1-m1-cA_6ogt-a1-m2-cA
6 6ogt-a1-m1-cA 99 99 0.7980 0.7980 0.7980 3.02e-58 6ogt-a1-m1-cA_6ogt-a1-m2-cA
7 3u7s-a1-m1-cB 99 99 0.8081 0.8081 0.8081 3.19e-58 3u7s-a1-m1-cA_3u7s-a1-m1-cB
8 3u7s-a1-m1-cA 99 99 0.8081 0.8081 0.8081 3.19e-58 3u7s-a1-m1-cA_3u7s-a1-m1-cB
9 4mc2-a1-m1-cB 99 99 0.7879 0.7879 0.7879 3.53e-57 4mc2-a1-m1-cA_4mc2-a1-m1-cB
10 4mc2-a1-m1-cA 99 99 0.7879 0.7879 0.7879 3.53e-57 4mc2-a1-m1-cA_4mc2-a1-m1-cB
11 1ztz-a2-m2-cB 99 99 0.7879 0.7879 0.7879 3.53e-57 1ztz-a2-m1-cA_1ztz-a2-m2-cB, 1ztz-a2-m1-cB_1ztz-a2-m2-cB, 1ztz-a2-m2-cA_1ztz-a2-m2-cB
12 1ztz-a2-m2-cA 99 99 0.7879 0.7879 0.7879 3.53e-57 1ztz-a2-m2-cA_1ztz-a2-m2-cB
13 1ztz-a2-m1-cB 99 99 0.7879 0.7879 0.7879 3.53e-57 1ztz-a2-m1-cB_1ztz-a2-m2-cB
14 1ztz-a2-m1-cA 99 99 0.7879 0.7879 0.7879 3.53e-57 1ztz-a2-m1-cA_1ztz-a2-m2-cB
15 1mt9-a1-m1-cB 99 99 0.7576 0.7576 0.7576 5.92e-57 1mt9-a1-m1-cA_1mt9-a1-m1-cB
16 1mt9-a1-m1-cA 99 99 0.7576 0.7576 0.7576 5.92e-57 1mt9-a1-m1-cA_1mt9-a1-m1-cB
17 1kj4-a3-m4-cD 99 99 0.7576 0.7576 0.7576 9.60e-57 1kj4-a3-m3-cA_1kj4-a3-m4-cD, 1kj4-a3-m4-cA_1kj4-a3-m4-cD
18 1kj4-a3-m4-cC 99 99 0.7576 0.7576 0.7576 9.60e-57 1kj4-a3-m2-cB_1kj4-a3-m4-cC
19 1kj4-a3-m4-cB 99 99 0.7576 0.7576 0.7576 9.60e-57 1kj4-a3-m2-cB_1kj4-a3-m4-cB
20 1kj4-a3-m4-cA 99 99 0.7576 0.7576 0.7576 9.60e-57 1kj4-a3-m4-cA_1kj4-a3-m4-cD
21 1kj4-a3-m3-cA 99 99 0.7576 0.7576 0.7576 9.60e-57 1kj4-a3-m3-cA_1kj4-a3-m4-cD
22 1kj4-a3-m2-cB 99 99 0.7576 0.7576 0.7576 9.60e-57 1kj4-a3-m2-cB_1kj4-a3-m4-cB, 1kj4-a3-m2-cB_1kj4-a3-m4-cC
23 3ttp-a1-m1-cB 99 99 0.7778 0.7778 0.7778 1.80e-55 3ttp-a1-m1-cA_3ttp-a1-m1-cB
24 3ttp-a1-m1-cA 99 99 0.7778 0.7778 0.7778 1.80e-55 3ttp-a1-m1-cA_3ttp-a1-m1-cB
25 2f80-a2-m4-cB 99 99 0.7576 0.7576 0.7576 1.09e-54 2f80-a2-m1-cA_2f80-a2-m4-cB
26 2f80-a2-m1-cA 99 99 0.7576 0.7576 0.7576 1.09e-54 2f80-a2-m1-cA_2f80-a2-m4-cB
27 2rkg-a1-m1-cB 100 100 0.7677 0.7600 0.7600 3.83e-54 2rkg-a1-m1-cA_2rkg-a1-m1-cB
28 2rkg-a1-m1-cA 100 100 0.7677 0.7600 0.7600 3.83e-54 2rkg-a1-m1-cA_2rkg-a1-m1-cB
29 2p3d-a1-m1-cB 99 99 0.7172 0.7172 0.7172 1.22e-53 2p3d-a1-m1-cA_2p3d-a1-m1-cB
30 2p3d-a1-m1-cA 99 99 0.7172 0.7172 0.7172 1.22e-53 2p3d-a1-m1-cA_2p3d-a1-m1-cB
31 8dch-a1-m1-cB 99 99 0.7576 0.7576 0.7576 6.37e-53 8dch-a1-m1-cA_8dch-a1-m1-cB
32 8dch-a1-m1-cA 99 99 0.7576 0.7576 0.7576 6.37e-53 8dch-a1-m1-cA_8dch-a1-m1-cB
33 2b7z-a1-m1-cB 99 99 0.8283 0.8283 0.8283 8.67e-53 2b7z-a1-m1-cA_2b7z-a1-m1-cB
34 2b7z-a1-m1-cA 99 99 0.8283 0.8283 0.8283 8.67e-53 2b7z-a1-m1-cA_2b7z-a1-m1-cB
35 6p9a-a1-m1-cB 99 99 0.7273 0.7273 0.7273 2.68e-52 6p9a-a1-m1-cA_6p9a-a1-m1-cB
36 6p9a-a1-m1-cA 99 99 0.7273 0.7273 0.7273 2.68e-52 6p9a-a1-m1-cA_6p9a-a1-m1-cB
37 2p3c-a1-m1-cB 98 99 0.7172 0.7245 0.7172 3.21e-51 2p3c-a1-m1-cA_2p3c-a1-m1-cB
38 2p3c-a1-m1-cA 98 99 0.7172 0.7245 0.7172 3.21e-51 2p3c-a1-m1-cA_2p3c-a1-m1-cB
39 3t3c-a1-m1-cB 99 99 0.7071 0.7071 0.7071 8.99e-51 3t3c-a1-m1-cA_3t3c-a1-m1-cB
40 3t3c-a1-m1-cA 99 99 0.7071 0.7071 0.7071 8.99e-51 3t3c-a1-m1-cA_3t3c-a1-m1-cB
41 2azc-a2-m2-cB 99 99 0.7677 0.7677 0.7677 3.95e-50 2azc-a2-m1-cA_2azc-a2-m2-cB
42 2azc-a2-m2-cA 99 99 0.7677 0.7677 0.7677 3.95e-50 2azc-a2-m1-cA_2azc-a2-m2-cA
43 2azc-a2-m1-cA 99 99 0.7677 0.7677 0.7677 3.95e-50 2azc-a2-m1-cA_2azc-a2-m2-cA, 2azc-a2-m1-cA_2azc-a2-m2-cB
44 1k6c-a1-m1-cA 94 99 0.7475 0.7872 0.7475 8.82e-50 1k6c-a1-m1-cB_1k6c-a1-m1-cA
45 5b18-a2-m1-cD 99 99 0.7677 0.7677 0.7677 1.56e-49 5b18-a2-m1-cC_5b18-a2-m1-cD
46 5b18-a2-m1-cC 99 99 0.7677 0.7677 0.7677 1.56e-49 5b18-a2-m1-cC_5b18-a2-m1-cD
47 3mws-a1-m1-cB 99 99 0.6970 0.6970 0.6970 2.16e-49 3mws-a1-m1-cA_3mws-a1-m1-cB
48 3mws-a1-m1-cA 99 99 0.6970 0.6970 0.6970 2.16e-49 3mws-a1-m1-cA_3mws-a1-m1-cB
49 1k6c-a1-m1-cB 93 99 0.7475 0.7957 0.7475 9.15e-49 1k6c-a1-m1-cB_1k6c-a1-m1-cA
50 2sam-a1-m2-cA 99 99 0.4848 0.4848 0.4848 1.80e-33 2sam-a1-m1-cA_2sam-a1-m2-cA
51 2sam-a1-m1-cA 99 99 0.4848 0.4848 0.4848 1.80e-33 2sam-a1-m1-cA_2sam-a1-m2-cA
52 1bai-a1-m1-cB 124 89 0.3232 0.2581 0.3596 1.05e-04 1bai-a1-m1-cA_1bai-a1-m1-cB
53 1bai-a1-m1-cA 124 89 0.3232 0.2581 0.3596 1.05e-04 1bai-a1-m1-cA_1bai-a1-m1-cB
54 2fmb-a1-m2-cA 104 99 0.3131 0.2981 0.3131 0.007 2fmb-a1-m1-cA_2fmb-a1-m2-cA
55 2fmb-a1-m1-cA 104 99 0.3131 0.2981 0.3131 0.007 2fmb-a1-m1-cA_2fmb-a1-m2-cA
56 3nr6-a2-m4-cB 114 95 0.2525 0.2193 0.2632 0.093 3nr6-a2-m2-cB_3nr6-a2-m4-cB, 3nr6-a2-m4-cB_3nr6-a2-m4-cA
57 3nr6-a2-m2-cB 114 95 0.2525 0.2193 0.2632 0.093 3nr6-a2-m2-cB_3nr6-a2-m4-cB
58 3nr6-a2-m4-cA 120 96 0.2424 0.2000 0.2500 0.099 3nr6-a2-m4-cB_3nr6-a2-m4-cA
59 6fiv-a1-m2-cA 112 70 0.2323 0.2054 0.3286 0.25 6fiv-a1-m1-cA_6fiv-a1-m2-cA
60 6fiv-a1-m1-cA 112 70 0.2323 0.2054 0.3286 0.25 6fiv-a1-m1-cA_6fiv-a1-m2-cA
61 2hah-a1-m2-cA 112 106 0.3535 0.3125 0.3302 0.81 2hah-a1-m1-cA_2hah-a1-m2-cA
62 2hah-a1-m1-cA 112 106 0.3535 0.3125 0.3302 0.81 2hah-a1-m1-cA_2hah-a1-m2-cA
63 6s1w-a1-m1-cB 108 94 0.2020 0.1852 0.2128 1.4 6s1w-a1-m1-cA_6s1w-a1-m1-cB
64 7bgt-a1-m1-cB 108 98 0.2020 0.1852 0.2041 1.7 7bgt-a1-m1-cA_7bgt-a1-m1-cB
65 7bgt-a1-m1-cA 108 98 0.2020 0.1852 0.2041 1.7 7bgt-a1-m1-cA_7bgt-a1-m1-cB
66 6s1w-a1-m1-cA 97 87 0.1818 0.1856 0.2069 3.8 6s1w-a1-m1-cA_6s1w-a1-m1-cB
67 3f1c-a1-m1-cB 230 29 0.1414 0.0609 0.4828 6.4 3f1c-a1-m1-cA_3f1c-a1-m1-cB
68 3f1c-a1-m1-cA 229 29 0.1414 0.0611 0.4828 6.5 3f1c-a1-m1-cA_3f1c-a1-m1-cB
69 3rap-a1-m1-cS 167 42 0.1212 0.0719 0.2857 9.0 3rap-a1-m1-cR_3rap-a1-m1-cS
70 3rap-a1-m1-cR 167 42 0.1212 0.0719 0.2857 9.0 3rap-a1-m1-cR_3rap-a1-m1-cS
71 6f0h-a1-m3-cC 153 57 0.1818 0.1176 0.3158 9.8 6f0h-a1-m3-cA_6f0h-a1-m3-cC
72 6f0h-a1-m3-cA 152 57 0.1818 0.1184 0.3158 9.8 6f0h-a1-m3-cA_6f0h-a1-m3-cC
73 3otr-a3-m1-cF 439 72 0.2020 0.0456 0.2778 9.8 3otr-a3-m1-cF_3otr-a3-m1-cE

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Reference:
Jacob Schwartz et al.

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