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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=99)
PQITLWQRPLVTIKIGGQLREALLDTGADDTIFEEISLPGRWKPKIIGGIGGFIKVRQYD
QIPIEICGHKVIGTVLVGPTPANVIGRNLMTQIGCTLNF

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2b7z-a1-m1-cB 99 99 1.0000 1.0000 1.0000 6.62e-68 2b7z-a1-m1-cA_2b7z-a1-m1-cB
2 2b7z-a1-m1-cA 99 99 1.0000 1.0000 1.0000 6.62e-68 2b7z-a1-m1-cA_2b7z-a1-m1-cB
3 3oud-a1-m1-cA 99 99 0.8889 0.8889 0.8889 2.24e-63 3oud-a1-m1-cA_3oud-a1-m1-cB
4 3oud-a1-m1-cB 99 99 0.8889 0.8889 0.8889 5.46e-63 3oud-a1-m1-cA_3oud-a1-m1-cB
5 6ogt-a1-m2-cA 99 99 0.8889 0.8889 0.8889 6.95e-63 6ogt-a1-m1-cA_6ogt-a1-m2-cA
6 6ogt-a1-m1-cA 99 99 0.8889 0.8889 0.8889 6.95e-63 6ogt-a1-m1-cA_6ogt-a1-m2-cA
7 1mt9-a1-m1-cB 99 99 0.8586 0.8586 0.8586 6.60e-62 1mt9-a1-m1-cA_1mt9-a1-m1-cB
8 1mt9-a1-m1-cA 99 99 0.8586 0.8586 0.8586 6.60e-62 1mt9-a1-m1-cA_1mt9-a1-m1-cB
9 4mc2-a1-m1-cB 99 99 0.8889 0.8889 0.8889 9.79e-62 4mc2-a1-m1-cA_4mc2-a1-m1-cB
10 4mc2-a1-m1-cA 99 99 0.8889 0.8889 0.8889 9.79e-62 4mc2-a1-m1-cA_4mc2-a1-m1-cB
11 1ztz-a2-m2-cB 99 99 0.8889 0.8889 0.8889 9.79e-62 1ztz-a2-m1-cA_1ztz-a2-m2-cB, 1ztz-a2-m1-cB_1ztz-a2-m2-cB, 1ztz-a2-m2-cA_1ztz-a2-m2-cB
12 1ztz-a2-m2-cA 99 99 0.8889 0.8889 0.8889 9.79e-62 1ztz-a2-m2-cA_1ztz-a2-m2-cB
13 1ztz-a2-m1-cB 99 99 0.8889 0.8889 0.8889 9.79e-62 1ztz-a2-m1-cB_1ztz-a2-m2-cB
14 1ztz-a2-m1-cA 99 99 0.8889 0.8889 0.8889 9.79e-62 1ztz-a2-m1-cA_1ztz-a2-m2-cB
15 1kj4-a3-m4-cD 99 99 0.8485 0.8485 0.8485 4.41e-61 1kj4-a3-m3-cA_1kj4-a3-m4-cD, 1kj4-a3-m4-cA_1kj4-a3-m4-cD
16 1kj4-a3-m4-cC 99 99 0.8485 0.8485 0.8485 4.41e-61 1kj4-a3-m2-cB_1kj4-a3-m4-cC
17 1kj4-a3-m4-cB 99 99 0.8485 0.8485 0.8485 4.41e-61 1kj4-a3-m2-cB_1kj4-a3-m4-cB
18 1kj4-a3-m4-cA 99 99 0.8485 0.8485 0.8485 4.41e-61 1kj4-a3-m4-cA_1kj4-a3-m4-cD
19 1kj4-a3-m3-cA 99 99 0.8485 0.8485 0.8485 4.41e-61 1kj4-a3-m3-cA_1kj4-a3-m4-cD
20 1kj4-a3-m2-cB 99 99 0.8485 0.8485 0.8485 4.41e-61 1kj4-a3-m2-cB_1kj4-a3-m4-cB, 1kj4-a3-m2-cB_1kj4-a3-m4-cC
21 3u7s-a1-m1-cB 99 99 0.8384 0.8384 0.8384 1.29e-60 3u7s-a1-m1-cA_3u7s-a1-m1-cB
22 3u7s-a1-m1-cA 99 99 0.8384 0.8384 0.8384 1.29e-60 3u7s-a1-m1-cA_3u7s-a1-m1-cB
23 3ggu-a1-m1-cB 99 99 0.8283 0.8283 0.8283 2.05e-60 3ggu-a1-m1-cA_3ggu-a1-m1-cB
24 3ggu-a1-m1-cA 99 99 0.8283 0.8283 0.8283 2.05e-60 3ggu-a1-m1-cA_3ggu-a1-m1-cB
25 2f80-a2-m4-cB 99 99 0.8586 0.8586 0.8586 2.86e-59 2f80-a2-m1-cA_2f80-a2-m4-cB
26 2f80-a2-m1-cA 99 99 0.8586 0.8586 0.8586 2.86e-59 2f80-a2-m1-cA_2f80-a2-m4-cB
27 2rkg-a1-m1-cB 100 100 0.8586 0.8500 0.8500 3.29e-59 2rkg-a1-m1-cA_2rkg-a1-m1-cB
28 2rkg-a1-m1-cA 100 100 0.8586 0.8500 0.8500 3.29e-59 2rkg-a1-m1-cA_2rkg-a1-m1-cB
29 3ttp-a1-m1-cB 99 99 0.8182 0.8182 0.8182 2.01e-58 3ttp-a1-m1-cA_3ttp-a1-m1-cB
30 3ttp-a1-m1-cA 99 99 0.8182 0.8182 0.8182 2.01e-58 3ttp-a1-m1-cA_3ttp-a1-m1-cB
31 8dch-a1-m1-cB 99 99 0.8283 0.8283 0.8283 4.70e-57 8dch-a1-m1-cA_8dch-a1-m1-cB
32 8dch-a1-m1-cA 99 99 0.8283 0.8283 0.8283 4.70e-57 8dch-a1-m1-cA_8dch-a1-m1-cB
33 2p3c-a1-m1-cB 98 99 0.7879 0.7959 0.7879 1.12e-55 2p3c-a1-m1-cA_2p3c-a1-m1-cB
34 2p3c-a1-m1-cA 98 99 0.7879 0.7959 0.7879 1.12e-55 2p3c-a1-m1-cA_2p3c-a1-m1-cB
35 2azc-a2-m2-cB 99 99 0.8788 0.8788 0.8788 1.86e-55 2azc-a2-m1-cA_2azc-a2-m2-cB
36 2azc-a2-m2-cA 99 99 0.8788 0.8788 0.8788 1.86e-55 2azc-a2-m1-cA_2azc-a2-m2-cA
37 2azc-a2-m1-cA 99 99 0.8788 0.8788 0.8788 1.86e-55 2azc-a2-m1-cA_2azc-a2-m2-cA, 2azc-a2-m1-cA_2azc-a2-m2-cB
38 2p3d-a1-m1-cB 99 99 0.7677 0.7677 0.7677 2.12e-55 2p3d-a1-m1-cA_2p3d-a1-m1-cB
39 2p3d-a1-m1-cA 99 99 0.7677 0.7677 0.7677 2.12e-55 2p3d-a1-m1-cA_2p3d-a1-m1-cB
40 6p9a-a1-m1-cB 99 99 0.7475 0.7475 0.7475 7.91e-55 6p9a-a1-m1-cA_6p9a-a1-m1-cB
41 6p9a-a1-m1-cA 99 99 0.7475 0.7475 0.7475 7.91e-55 6p9a-a1-m1-cA_6p9a-a1-m1-cB
42 3t3c-a1-m1-cB 99 99 0.7778 0.7778 0.7778 8.54e-55 3t3c-a1-m1-cA_3t3c-a1-m1-cB
43 3t3c-a1-m1-cA 99 99 0.7778 0.7778 0.7778 8.54e-55 3t3c-a1-m1-cA_3t3c-a1-m1-cB
44 1k6c-a1-m1-cA 94 99 0.8283 0.8723 0.8283 1.30e-53 1k6c-a1-m1-cB_1k6c-a1-m1-cA
45 1k6c-a1-m1-cB 93 99 0.8384 0.8925 0.8384 9.28e-53 1k6c-a1-m1-cB_1k6c-a1-m1-cA
46 3mws-a1-m1-cB 99 99 0.7475 0.7475 0.7475 1.00e-52 3mws-a1-m1-cA_3mws-a1-m1-cB
47 3mws-a1-m1-cA 99 99 0.7475 0.7475 0.7475 1.00e-52 3mws-a1-m1-cA_3mws-a1-m1-cB
48 5b18-a2-m1-cD 99 99 0.7980 0.7980 0.7980 3.54e-51 5b18-a2-m1-cC_5b18-a2-m1-cD
49 5b18-a2-m1-cC 99 99 0.7980 0.7980 0.7980 3.54e-51 5b18-a2-m1-cC_5b18-a2-m1-cD
50 2sam-a1-m2-cA 99 99 0.5253 0.5253 0.5253 9.77e-34 2sam-a1-m1-cA_2sam-a1-m2-cA
51 2sam-a1-m1-cA 99 99 0.5253 0.5253 0.5253 9.77e-34 2sam-a1-m1-cA_2sam-a1-m2-cA
52 1bai-a1-m1-cB 124 89 0.3333 0.2661 0.3708 4.85e-06 1bai-a1-m1-cA_1bai-a1-m1-cB
53 1bai-a1-m1-cA 124 89 0.3333 0.2661 0.3708 4.85e-06 1bai-a1-m1-cA_1bai-a1-m1-cB
54 3nr6-a2-m4-cB 114 93 0.2525 0.2193 0.2688 0.001 3nr6-a2-m2-cB_3nr6-a2-m4-cB, 3nr6-a2-m4-cB_3nr6-a2-m4-cA
55 3nr6-a2-m2-cB 114 93 0.2525 0.2193 0.2688 0.001 3nr6-a2-m2-cB_3nr6-a2-m4-cB
56 3nr6-a2-m4-cA 120 93 0.2525 0.2083 0.2688 0.003 3nr6-a2-m4-cB_3nr6-a2-m4-cA
57 2fmb-a1-m2-cA 104 99 0.2626 0.2500 0.2626 0.073 2fmb-a1-m1-cA_2fmb-a1-m2-cA
58 2fmb-a1-m1-cA 104 99 0.2626 0.2500 0.2626 0.073 2fmb-a1-m1-cA_2fmb-a1-m2-cA
59 6s1w-a1-m1-cA 97 92 0.2222 0.2268 0.2391 0.084 6s1w-a1-m1-cA_6s1w-a1-m1-cB
60 6s1w-a1-m1-cB 108 94 0.2222 0.2037 0.2340 0.17 6s1w-a1-m1-cA_6s1w-a1-m1-cB
61 7bgt-a1-m1-cB 108 98 0.2222 0.2037 0.2245 0.23 7bgt-a1-m1-cA_7bgt-a1-m1-cB
62 7bgt-a1-m1-cA 108 98 0.2222 0.2037 0.2245 0.23 7bgt-a1-m1-cA_7bgt-a1-m1-cB
63 2hah-a1-m2-cA 112 108 0.3535 0.3125 0.3241 0.27 2hah-a1-m1-cA_2hah-a1-m2-cA
64 2hah-a1-m1-cA 112 108 0.3535 0.3125 0.3241 0.27 2hah-a1-m1-cA_2hah-a1-m2-cA
65 6fiv-a1-m2-cA 112 32 0.1515 0.1339 0.4688 1.1 6fiv-a1-m1-cA_6fiv-a1-m2-cA
66 6fiv-a1-m1-cA 112 32 0.1515 0.1339 0.4688 1.1 6fiv-a1-m1-cA_6fiv-a1-m2-cA
67 2rsp-a1-m1-cA 115 29 0.1414 0.1217 0.4828 4.7 2rsp-a1-m1-cB_2rsp-a1-m1-cA
68 6jbj-a1-m1-cB 565 33 0.1616 0.0283 0.4848 4.7 6jbj-a1-m1-cA_6jbj-a1-m1-cB
69 6jbj-a1-m1-cA 565 33 0.1616 0.0283 0.4848 4.7 6jbj-a1-m1-cA_6jbj-a1-m1-cB
70 2rsp-a1-m1-cB 113 21 0.1212 0.1062 0.5714 4.8 2rsp-a1-m1-cB_2rsp-a1-m1-cA
71 6u1v-a1-m1-cB 389 37 0.1515 0.0386 0.4054 4.9 6u1v-a1-m1-cD_6u1v-a1-m1-cB
72 6u1v-a1-m1-cC 383 37 0.1515 0.0392 0.4054 5.2 6u1v-a1-m1-cD_6u1v-a1-m1-cC
73 6u1v-a1-m1-cD 382 37 0.1515 0.0393 0.4054 5.2 6u1v-a1-m1-cD_6u1v-a1-m1-cB, 6u1v-a1-m1-cD_6u1v-a1-m1-cC
74 5a9s-a1-m1-cA 280 58 0.1717 0.0607 0.2931 7.4 5a9s-a1-m1-cA_5a9s-a1-m1-cB
75 5a9s-a1-m1-cB 282 58 0.1717 0.0603 0.2931 7.5 5a9s-a1-m1-cA_5a9s-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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