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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=99)
PQITLWQRPVITVKIGKEVREALLDTGADDTVIEEIQLEGKWKPKMIGGIGGFIKVRQYD
NVTIDIQGRKAVGTVLVGPTPVNIIGRNFLTQIGATLNF

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3mws-a1-m1-cB 99 99 1.0000 1.0000 1.0000 1.08e-66 3mws-a1-m1-cA_3mws-a1-m1-cB
2 3mws-a1-m1-cA 99 99 1.0000 1.0000 1.0000 1.08e-66 3mws-a1-m1-cA_3mws-a1-m1-cB
3 4mc2-a1-m1-cB 99 99 0.7879 0.7879 0.7879 1.11e-54 4mc2-a1-m1-cA_4mc2-a1-m1-cB
4 4mc2-a1-m1-cA 99 99 0.7879 0.7879 0.7879 1.11e-54 4mc2-a1-m1-cA_4mc2-a1-m1-cB
5 1ztz-a2-m2-cB 99 99 0.7879 0.7879 0.7879 1.11e-54 1ztz-a2-m1-cA_1ztz-a2-m2-cB, 1ztz-a2-m1-cB_1ztz-a2-m2-cB, 1ztz-a2-m2-cA_1ztz-a2-m2-cB
6 1ztz-a2-m2-cA 99 99 0.7879 0.7879 0.7879 1.11e-54 1ztz-a2-m2-cA_1ztz-a2-m2-cB
7 1ztz-a2-m1-cB 99 99 0.7879 0.7879 0.7879 1.11e-54 1ztz-a2-m1-cB_1ztz-a2-m2-cB
8 1ztz-a2-m1-cA 99 99 0.7879 0.7879 0.7879 1.11e-54 1ztz-a2-m1-cA_1ztz-a2-m2-cB
9 2f80-a2-m4-cB 99 99 0.7879 0.7879 0.7879 1.14e-54 2f80-a2-m1-cA_2f80-a2-m4-cB
10 2f80-a2-m1-cA 99 99 0.7879 0.7879 0.7879 1.14e-54 2f80-a2-m1-cA_2f80-a2-m4-cB
11 1kj4-a3-m4-cD 99 99 0.7576 0.7576 0.7576 1.91e-53 1kj4-a3-m3-cA_1kj4-a3-m4-cD, 1kj4-a3-m4-cA_1kj4-a3-m4-cD
12 1kj4-a3-m4-cC 99 99 0.7576 0.7576 0.7576 1.91e-53 1kj4-a3-m2-cB_1kj4-a3-m4-cC
13 1kj4-a3-m4-cB 99 99 0.7576 0.7576 0.7576 1.91e-53 1kj4-a3-m2-cB_1kj4-a3-m4-cB
14 1kj4-a3-m4-cA 99 99 0.7576 0.7576 0.7576 1.91e-53 1kj4-a3-m4-cA_1kj4-a3-m4-cD
15 1kj4-a3-m3-cA 99 99 0.7576 0.7576 0.7576 1.91e-53 1kj4-a3-m3-cA_1kj4-a3-m4-cD
16 1kj4-a3-m2-cB 99 99 0.7576 0.7576 0.7576 1.91e-53 1kj4-a3-m2-cB_1kj4-a3-m4-cB, 1kj4-a3-m2-cB_1kj4-a3-m4-cC
17 1mt9-a1-m1-cB 99 99 0.7475 0.7475 0.7475 6.45e-53 1mt9-a1-m1-cA_1mt9-a1-m1-cB
18 1mt9-a1-m1-cA 99 99 0.7475 0.7475 0.7475 6.45e-53 1mt9-a1-m1-cA_1mt9-a1-m1-cB
19 2p3c-a1-m1-cB 98 99 0.7677 0.7755 0.7677 8.22e-53 2p3c-a1-m1-cA_2p3c-a1-m1-cB
20 2p3c-a1-m1-cA 98 99 0.7677 0.7755 0.7677 8.22e-53 2p3c-a1-m1-cA_2p3c-a1-m1-cB
21 6ogt-a1-m2-cA 99 99 0.7273 0.7273 0.7273 8.96e-53 6ogt-a1-m1-cA_6ogt-a1-m2-cA
22 6ogt-a1-m1-cA 99 99 0.7273 0.7273 0.7273 8.96e-53 6ogt-a1-m1-cA_6ogt-a1-m2-cA
23 3oud-a1-m1-cA 99 99 0.7273 0.7273 0.7273 4.16e-52 3oud-a1-m1-cA_3oud-a1-m1-cB
24 3oud-a1-m1-cB 99 99 0.7172 0.7172 0.7172 1.64e-51 3oud-a1-m1-cA_3oud-a1-m1-cB
25 3ttp-a1-m1-cB 99 99 0.7374 0.7374 0.7374 1.24e-50 3ttp-a1-m1-cA_3ttp-a1-m1-cB
26 3ttp-a1-m1-cA 99 99 0.7374 0.7374 0.7374 1.24e-50 3ttp-a1-m1-cA_3ttp-a1-m1-cB
27 6p9a-a1-m1-cB 99 99 0.7071 0.7071 0.7071 6.92e-50 6p9a-a1-m1-cA_6p9a-a1-m1-cB
28 6p9a-a1-m1-cA 99 99 0.7071 0.7071 0.7071 6.92e-50 6p9a-a1-m1-cA_6p9a-a1-m1-cB
29 2p3d-a1-m1-cB 99 99 0.7071 0.7071 0.7071 7.89e-50 2p3d-a1-m1-cA_2p3d-a1-m1-cB
30 2p3d-a1-m1-cA 99 99 0.7071 0.7071 0.7071 7.89e-50 2p3d-a1-m1-cA_2p3d-a1-m1-cB
31 3t3c-a1-m1-cB 99 99 0.6970 0.6970 0.6970 2.07e-49 3t3c-a1-m1-cA_3t3c-a1-m1-cB
32 3t3c-a1-m1-cA 99 99 0.6970 0.6970 0.6970 2.07e-49 3t3c-a1-m1-cA_3t3c-a1-m1-cB
33 3ggu-a1-m1-cB 99 99 0.6970 0.6970 0.6970 2.16e-49 3ggu-a1-m1-cA_3ggu-a1-m1-cB
34 3ggu-a1-m1-cA 99 99 0.6970 0.6970 0.6970 2.16e-49 3ggu-a1-m1-cA_3ggu-a1-m1-cB
35 8dch-a1-m1-cB 99 99 0.6970 0.6970 0.6970 3.63e-49 8dch-a1-m1-cA_8dch-a1-m1-cB
36 8dch-a1-m1-cA 99 99 0.6970 0.6970 0.6970 3.63e-49 8dch-a1-m1-cA_8dch-a1-m1-cB
37 3u7s-a1-m1-cB 99 99 0.6970 0.6970 0.6970 3.96e-49 3u7s-a1-m1-cA_3u7s-a1-m1-cB
38 3u7s-a1-m1-cA 99 99 0.6970 0.6970 0.6970 3.96e-49 3u7s-a1-m1-cA_3u7s-a1-m1-cB
39 2rkg-a1-m1-cB 100 100 0.7071 0.7000 0.7000 3.04e-48 2rkg-a1-m1-cA_2rkg-a1-m1-cB
40 2rkg-a1-m1-cA 100 100 0.7071 0.7000 0.7000 3.04e-48 2rkg-a1-m1-cA_2rkg-a1-m1-cB
41 2b7z-a1-m1-cB 99 99 0.7475 0.7475 0.7475 3.97e-45 2b7z-a1-m1-cA_2b7z-a1-m1-cB
42 2b7z-a1-m1-cA 99 99 0.7475 0.7475 0.7475 3.97e-45 2b7z-a1-m1-cA_2b7z-a1-m1-cB
43 2azc-a2-m2-cB 99 99 0.7273 0.7273 0.7273 1.18e-44 2azc-a2-m1-cA_2azc-a2-m2-cB
44 2azc-a2-m2-cA 99 99 0.7273 0.7273 0.7273 1.18e-44 2azc-a2-m1-cA_2azc-a2-m2-cA
45 2azc-a2-m1-cA 99 99 0.7273 0.7273 0.7273 1.18e-44 2azc-a2-m1-cA_2azc-a2-m2-cA, 2azc-a2-m1-cA_2azc-a2-m2-cB
46 1k6c-a1-m1-cA 94 99 0.6869 0.7234 0.6869 4.35e-44 1k6c-a1-m1-cB_1k6c-a1-m1-cA
47 1k6c-a1-m1-cB 93 99 0.6970 0.7419 0.6970 3.01e-43 1k6c-a1-m1-cB_1k6c-a1-m1-cA
48 5b18-a2-m1-cD 99 99 0.6465 0.6465 0.6465 2.17e-40 5b18-a2-m1-cC_5b18-a2-m1-cD
49 5b18-a2-m1-cC 99 99 0.6465 0.6465 0.6465 2.17e-40 5b18-a2-m1-cC_5b18-a2-m1-cD
50 2sam-a1-m2-cA 99 99 0.5051 0.5051 0.5051 7.94e-34 2sam-a1-m1-cA_2sam-a1-m2-cA
51 2sam-a1-m1-cA 99 99 0.5051 0.5051 0.5051 7.94e-34 2sam-a1-m1-cA_2sam-a1-m2-cA
52 1bai-a1-m1-cB 124 89 0.3939 0.3145 0.4382 1.68e-07 1bai-a1-m1-cA_1bai-a1-m1-cB
53 1bai-a1-m1-cA 124 89 0.3939 0.3145 0.4382 1.68e-07 1bai-a1-m1-cA_1bai-a1-m1-cB
54 2fmb-a1-m2-cA 104 99 0.3434 0.3269 0.3434 9.07e-05 2fmb-a1-m1-cA_2fmb-a1-m2-cA
55 2fmb-a1-m1-cA 104 99 0.3434 0.3269 0.3434 9.07e-05 2fmb-a1-m1-cA_2fmb-a1-m2-cA
56 3nr6-a2-m4-cA 120 97 0.2626 0.2167 0.2680 0.010 3nr6-a2-m4-cB_3nr6-a2-m4-cA
57 2hah-a1-m2-cA 112 106 0.3939 0.3482 0.3679 0.021 2hah-a1-m1-cA_2hah-a1-m2-cA
58 2hah-a1-m1-cA 112 106 0.3939 0.3482 0.3679 0.021 2hah-a1-m1-cA_2hah-a1-m2-cA
59 3nr6-a2-m4-cB 114 94 0.2323 0.2018 0.2447 0.054 3nr6-a2-m2-cB_3nr6-a2-m4-cB, 3nr6-a2-m4-cB_3nr6-a2-m4-cA
60 3nr6-a2-m2-cB 114 94 0.2323 0.2018 0.2447 0.054 3nr6-a2-m2-cB_3nr6-a2-m4-cB
61 6s1w-a1-m1-cB 108 98 0.2828 0.2593 0.2857 0.10 6s1w-a1-m1-cA_6s1w-a1-m1-cB
62 7bgt-a1-m1-cB 108 98 0.2828 0.2593 0.2857 0.11 7bgt-a1-m1-cA_7bgt-a1-m1-cB
63 7bgt-a1-m1-cA 108 98 0.2828 0.2593 0.2857 0.11 7bgt-a1-m1-cA_7bgt-a1-m1-cB
64 6s1w-a1-m1-cA 97 92 0.2222 0.2268 0.2391 0.11 6s1w-a1-m1-cA_6s1w-a1-m1-cB
65 6fiv-a1-m2-cA 112 84 0.2525 0.2232 0.2976 0.22 6fiv-a1-m1-cA_6fiv-a1-m2-cA
66 6fiv-a1-m1-cA 112 84 0.2525 0.2232 0.2976 0.22 6fiv-a1-m1-cA_6fiv-a1-m2-cA
67 3f1c-a1-m1-cA 229 29 0.1515 0.0655 0.5172 0.58 3f1c-a1-m1-cA_3f1c-a1-m1-cB
68 3f1c-a1-m1-cB 230 29 0.1515 0.0652 0.5172 0.58 3f1c-a1-m1-cA_3f1c-a1-m1-cB
69 2ols-a2-m2-cA 725 39 0.1515 0.0207 0.3846 1.8 2ols-a2-m1-cA_2ols-a2-m2-cA
70 2ols-a2-m1-cA 725 39 0.1515 0.0207 0.3846 1.8 2ols-a2-m1-cA_2ols-a2-m2-cA
71 7cm9-a2-m1-cD 692 39 0.1313 0.0188 0.3333 6.1 7cm9-a2-m1-cD_7cm9-a2-m1-cC
72 7cm9-a2-m1-cC 693 39 0.1313 0.0188 0.3333 6.2 7cm9-a2-m1-cD_7cm9-a2-m1-cC
73 4nsm-a1-m3-cA 71 37 0.1212 0.1690 0.3243 8.5 4nsm-a1-m2-cA_4nsm-a1-m3-cA
74 4nsm-a1-m2-cA 71 37 0.1212 0.1690 0.3243 8.5 4nsm-a1-m2-cA_4nsm-a1-m3-cA

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Reference:
Jacob Schwartz et al.

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