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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=98)
PRNSVRVGYRGTKFLFVDITKHLLHDGEKEVYVSALGGAINEAVSVVEMLKDQQMVVVKK
ITTSRQVGPVDKIEIVVTKADGFDAKYEEQQKAREAKR

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 7dl8-a1-m1-cC 98 98 1.0000 1.0000 1.0000 8.28e-68 7dl8-a1-m1-cC_7dl8-a1-m1-cD
2 7dl8-a1-m1-cD 109 97 0.9898 0.8899 1.0000 8.75e-67 7dl8-a1-m1-cC_7dl8-a1-m1-cD, 7dl8-a1-m1-cD_7dl8-a1-m1-cA
3 7dl8-a1-m1-cA 114 99 1.0000 0.8596 0.9899 3.11e-66 7dl8-a1-m1-cD_7dl8-a1-m1-cA
4 2q3v-a2-m1-cA 89 84 0.3265 0.3596 0.3810 1.73e-06 2q3v-a2-m1-cA_2q3v-a2-m1-cB
5 2q3v-a1-m1-cA 89 84 0.3265 0.3596 0.3810 1.73e-06 2q3v-a1-m1-cA_2q3v-a1-m2-cB
6 2q3v-a2-m1-cB 99 90 0.3265 0.3232 0.3556 8.18e-04 2q3v-a2-m1-cA_2q3v-a2-m1-cB
7 2q3v-a1-m2-cB 99 90 0.3265 0.3232 0.3556 8.18e-04 2q3v-a1-m1-cA_2q3v-a1-m2-cB, 2q3v-a1-m1-cB_2q3v-a1-m2-cB
8 2q3v-a1-m1-cB 99 90 0.3265 0.3232 0.3556 8.18e-04 2q3v-a1-m1-cB_2q3v-a1-m2-cB
9 2z7c-a2-m1-cC 89 30 0.1327 0.1461 0.4333 0.13 2z7c-a2-m1-cC_2z7c-a2-m1-cD
10 2z7c-a2-m1-cD 92 30 0.1327 0.1413 0.4333 0.13 2z7c-a2-m1-cC_2z7c-a2-m1-cD
11 6k97-a1-m1-cB 267 42 0.2041 0.0749 0.4762 0.46 6k97-a1-m1-cB_6k97-a1-m1-cA
12 6k97-a1-m1-cA 272 42 0.2041 0.0735 0.4762 0.51 6k97-a1-m1-cB_6k97-a1-m1-cA
13 2f6i-a1-m1-cA 182 39 0.0918 0.0495 0.2308 1.8 2f6i-a1-m2-cF_2f6i-a1-m1-cA
14 2f6i-a1-m2-cF 181 39 0.0918 0.0497 0.2308 1.9 2f6i-a1-m2-cE_2f6i-a1-m2-cF, 2f6i-a1-m2-cF_2f6i-a1-m1-cA
15 2f6i-a1-m2-cE 175 39 0.0918 0.0514 0.2308 2.0 2f6i-a1-m2-cE_2f6i-a1-m2-cF
16 1t62-a1-m1-cA 153 42 0.1122 0.0719 0.2619 3.7 1t62-a1-m1-cA_1t62-a1-m1-cB
17 7b7q-a1-m1-cB 628 50 0.1633 0.0255 0.3200 4.5 7b7q-a1-m1-cA_7b7q-a1-m1-cB
18 7b7q-a1-m1-cA 628 50 0.1633 0.0255 0.3200 4.5 7b7q-a1-m1-cA_7b7q-a1-m1-cB
19 3lg3-a1-m2-cB 406 66 0.1939 0.0468 0.2879 9.7 3lg3-a1-m1-cB_3lg3-a1-m2-cB, 3lg3-a1-m2-cB_3lg3-a1-m1-cA, 3lg3-a1-m2-cB_3lg3-a1-m2-cA
20 3lg3-a1-m1-cB 406 66 0.1939 0.0468 0.2879 9.7 3lg3-a1-m1-cB_3lg3-a1-m2-cB
21 3lg3-a1-m2-cA 409 66 0.1939 0.0465 0.2879 9.8 3lg3-a1-m2-cB_3lg3-a1-m2-cA
22 3lg3-a1-m1-cA 409 66 0.1939 0.0465 0.2879 9.8 3lg3-a1-m2-cB_3lg3-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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