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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=80)
PVLEIYQDIANLTSRLAAANASNWDLVLNHGQEYVCLVERLRELDEAARGKFDLLVRILE
NDAAVRDLALPQLARLSDLL

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3h3m-a1-m1-cB 80 80 1.0000 1.0000 1.0000 5.19e-52 3h3m-a1-m1-cB_3h3m-a1-m1-cA
2 3h3m-a1-m1-cA 87 86 1.0000 0.9195 0.9302 3.61e-49 3h3m-a1-m1-cB_3h3m-a1-m1-cA
3 1gef-a1-m1-cA 120 37 0.1375 0.0917 0.2973 1.7 1gef-a1-m1-cE_1gef-a1-m1-cA
4 1gef-a1-m1-cE 114 37 0.1375 0.0965 0.2973 1.7 1gef-a1-m1-cE_1gef-a1-m1-cA
5 7vpf-a1-m1-cB 273 63 0.2250 0.0659 0.2857 3.0 7vpf-a1-m1-cA_7vpf-a1-m1-cB
6 7vpf-a1-m1-cA 273 63 0.2250 0.0659 0.2857 3.0 7vpf-a1-m1-cA_7vpf-a1-m1-cB
7 2zih-a1-m1-cB 281 65 0.2000 0.0569 0.2462 3.7 2zih-a1-m1-cB_2zih-a1-m1-cD
8 2zih-a1-m1-cC 279 65 0.2000 0.0573 0.2462 3.8 2zih-a1-m1-cC_2zih-a1-m1-cD
9 2zih-a1-m1-cA 282 65 0.2000 0.0567 0.2462 3.9 2zih-a1-m1-cA_2zih-a1-m1-cD
10 2zih-a1-m1-cD 283 65 0.2000 0.0565 0.2462 4.1 2zih-a1-m1-cA_2zih-a1-m1-cD, 2zih-a1-m1-cB_2zih-a1-m1-cD, 2zih-a1-m1-cC_2zih-a1-m1-cD

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Reference:
Jacob Schwartz et al.

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