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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=81)
PVLLKSTETGQYLRINPDGTVDGTRDRSDPHIQFQISPEGNGEVLLKSTETGQYLRINPD
GTVDGTRDRSDPHIQFQISPE

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3ogf-a1-m1-cB 81 81 1.0000 1.0000 1.0000 6.30e-55 3ogf-a1-m1-cA_3ogf-a1-m1-cB
2 3ogf-a1-m1-cA 81 81 1.0000 1.0000 1.0000 6.30e-55 3ogf-a1-m1-cA_3ogf-a1-m1-cB
3 4ow4-a3-m2-cB 123 80 0.7901 0.5203 0.8000 6.80e-41 4ow4-a3-m2-cB_4ow4-a3-m1-cA
4 4ow4-a3-m2-cB 123 79 0.7778 0.5122 0.7975 3.68e-40 4ow4-a3-m2-cB_4ow4-a3-m1-cA
5 4ow4-a3-m2-cB 123 39 0.3951 0.2602 0.8205 3.13e-16 4ow4-a3-m2-cB_4ow4-a3-m1-cA
6 4ow4-a3-m1-cA 123 80 0.7901 0.5203 0.8000 6.80e-41 4ow4-a3-m2-cB_4ow4-a3-m1-cA
7 4ow4-a3-m1-cA 123 79 0.7778 0.5122 0.7975 3.68e-40 4ow4-a3-m2-cB_4ow4-a3-m1-cA
8 4ow4-a3-m1-cA 123 39 0.3951 0.2602 0.8205 3.13e-16 4ow4-a3-m2-cB_4ow4-a3-m1-cA
9 3ol0-a1-m1-cC 41 40 0.4938 0.9756 1.0000 2.09e-23 3ol0-a1-m1-cB_3ol0-a1-m1-cC
10 3ol0-a1-m1-cC 41 38 0.4691 0.9268 1.0000 1.33e-21 3ol0-a1-m1-cB_3ol0-a1-m1-cC
11 3ol0-a1-m1-cB 41 40 0.4938 0.9756 1.0000 2.09e-23 3ol0-a1-m1-cB_3ol0-a1-m1-cC
12 3ol0-a1-m1-cB 41 38 0.4691 0.9268 1.0000 1.33e-21 3ol0-a1-m1-cB_3ol0-a1-m1-cC
13 5x1o-a1-m1-cB 127 77 0.3580 0.2283 0.3766 1.01e-13 5x1o-a1-m1-cA_5x1o-a1-m1-cB
14 5x1o-a1-m1-cB 127 36 0.2346 0.1496 0.5278 7.08e-08 5x1o-a1-m1-cA_5x1o-a1-m1-cB
15 5x1o-a1-m1-cA 127 77 0.3580 0.2283 0.3766 1.01e-13 5x1o-a1-m1-cA_5x1o-a1-m1-cB
16 5x1o-a1-m1-cA 127 36 0.2346 0.1496 0.5278 7.08e-08 5x1o-a1-m1-cA_5x1o-a1-m1-cB
17 2p23-a1-m1-cB 136 66 0.2469 0.1471 0.3030 0.001 2p23-a1-m1-cA_2p23-a1-m1-cB
18 2p23-a1-m1-cA 136 66 0.2469 0.1471 0.3030 0.001 2p23-a1-m1-cA_2p23-a1-m1-cB
19 3f1r-a1-m1-cB 157 60 0.2346 0.1210 0.3167 0.006 3f1r-a1-m1-cA_3f1r-a1-m1-cB
20 3f1r-a1-m1-cB 157 19 0.1358 0.0701 0.5789 4.9 3f1r-a1-m1-cA_3f1r-a1-m1-cB
21 3f1r-a1-m1-cA 157 60 0.2346 0.1210 0.3167 0.006 3f1r-a1-m1-cA_3f1r-a1-m1-cB
22 3f1r-a1-m1-cA 157 19 0.1358 0.0701 0.5789 4.9 3f1r-a1-m1-cA_3f1r-a1-m1-cB
23 1g82-a4-m1-cC 155 60 0.2222 0.1161 0.3000 0.016 1g82-a4-m1-cC_1g82-a4-m1-cA, 1g82-a4-m1-cC_1g82-a4-m1-cB
24 1g82-a4-m1-cA 157 60 0.2222 0.1146 0.3000 0.018 1g82-a4-m1-cC_1g82-a4-m1-cA
25 1g82-a4-m1-cB 157 60 0.2222 0.1146 0.3000 0.018 1g82-a4-m1-cC_1g82-a4-m1-cB
26 3hxj-a2-m1-cC 285 58 0.2593 0.0737 0.3621 0.30 3hxj-a2-m1-cC_3hxj-a2-m1-cD
27 3hxj-a2-m1-cD 302 58 0.2593 0.0695 0.3621 0.34 3hxj-a2-m1-cC_3hxj-a2-m1-cD
28 3d8l-a1-m1-cC 88 40 0.1481 0.1364 0.3000 1.8 3d8l-a1-m1-cC_3d8l-a1-m1-cB
29 7ax0-a2-m2-cA 317 54 0.2469 0.0631 0.3704 2.1 7ax0-a2-m1-cA_7ax0-a2-m2-cA
30 7ax0-a2-m2-cA 317 54 0.2469 0.0631 0.3704 2.1 7ax0-a2-m1-cA_7ax0-a2-m2-cA
31 7ax0-a2-m1-cA 317 54 0.2469 0.0631 0.3704 2.1 7ax0-a2-m1-cA_7ax0-a2-m2-cA
32 7ax0-a2-m1-cA 317 54 0.2469 0.0631 0.3704 2.1 7ax0-a2-m1-cA_7ax0-a2-m2-cA
33 3d8l-a1-m1-cB 91 40 0.1481 0.1319 0.3000 2.2 3d8l-a1-m1-cC_3d8l-a1-m1-cB
34 6tum-a1-m1-cA 197 49 0.2099 0.0863 0.3469 2.9 6tum-a1-m1-cA_6tum-a1-m1-cB
35 6tum-a1-m1-cA 197 25 0.1235 0.0508 0.4000 4.8 6tum-a1-m1-cA_6tum-a1-m1-cB
36 6tum-a1-m1-cB 199 49 0.2099 0.0854 0.3469 3.2 6tum-a1-m1-cA_6tum-a1-m1-cB
37 6tum-a1-m1-cB 199 25 0.1235 0.0503 0.4000 5.2 6tum-a1-m1-cA_6tum-a1-m1-cB
38 1jly-a1-m1-cB 299 49 0.1728 0.0468 0.2857 3.4 1jly-a1-m1-cA_1jly-a1-m1-cB
39 1jly-a1-m1-cA 299 49 0.1728 0.0468 0.2857 3.4 1jly-a1-m1-cA_1jly-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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