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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=99)
PVVKINAIEVPAGAGPELEKRFAHSAHAVENSPGFLGFQLLRPVKGEERYFVVTHWESDE
AFQAWANGPAIAAHAGHRANPVATGASLLEFEVVLDVGG

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 6ds7-a1-m1-cB 99 99 1.0000 1.0000 1.0000 1.19e-67 6ds7-a1-m1-cA_6ds7-a1-m1-cB
2 6ds7-a1-m1-cA 99 99 1.0000 1.0000 1.0000 1.19e-67 6ds7-a1-m1-cA_6ds7-a1-m1-cB
3 4nl5-a2-m2-cB 100 99 0.9899 0.9800 0.9899 3.79e-67 4nl5-a2-m2-cB_4nl5-a2-m1-cA
4 4nl5-a2-m1-cA 101 99 0.9899 0.9703 0.9899 4.66e-67 4nl5-a2-m2-cB_4nl5-a2-m1-cA
5 6ple-a1-m1-cB 96 96 0.9697 1.0000 1.0000 1.12e-65 6ple-a1-m1-cA_6ple-a1-m1-cB
6 6ple-a1-m1-cA 96 96 0.9697 1.0000 1.0000 1.12e-65 6ple-a1-m1-cA_6ple-a1-m1-cB
7 5uq4-a1-m1-cB 90 99 0.8687 0.9556 0.8687 1.56e-54 5uq4-a1-m1-cA_5uq4-a1-m1-cB
8 5uq4-a1-m1-cA 86 98 0.8485 0.9767 0.8571 7.94e-53 5uq4-a1-m1-cA_5uq4-a1-m1-cB
9 1iuj-a2-m2-cB 103 101 0.3939 0.3786 0.3861 1.77e-13 1iuj-a2-m1-cA_1iuj-a2-m2-cB, 1iuj-a2-m2-cA_1iuj-a2-m2-cB
10 1iuj-a2-m2-cA 102 98 0.3838 0.3725 0.3878 4.24e-13 1iuj-a2-m1-cA_1iuj-a2-m2-cA, 1iuj-a2-m2-cA_1iuj-a2-m2-cB
11 1iuj-a2-m1-cA 102 98 0.3838 0.3725 0.3878 4.24e-13 1iuj-a2-m1-cA_1iuj-a2-m2-cA, 1iuj-a2-m1-cA_1iuj-a2-m2-cB
12 7bio-a1-m1-cA 106 62 0.1717 0.1604 0.2742 1.31e-04 7bio-a1-m1-cA_7bio-a1-m1-cB
13 7bio-a1-m1-cB 111 62 0.1717 0.1532 0.2742 2.09e-04 7bio-a1-m1-cA_7bio-a1-m1-cB
14 1xbw-a2-m1-cD 98 74 0.1919 0.1939 0.2568 0.004 1xbw-a2-m1-cC_1xbw-a2-m1-cD
15 1xbw-a2-m1-cC 90 80 0.1919 0.2111 0.2375 0.005 1xbw-a2-m1-cC_1xbw-a2-m1-cD
16 3kg0-a3-m2-cA 97 63 0.2020 0.2062 0.3175 0.008 3kg0-a3-m1-cC_3kg0-a3-m2-cA
17 3kg0-a3-m1-cC 97 63 0.2020 0.2062 0.3175 0.008 3kg0-a3-m1-cC_3kg0-a3-m2-cA
18 3lgn-a1-m1-cB 109 85 0.2020 0.1835 0.2353 0.009 3lgn-a1-m1-cB_3lgn-a1-m1-cA
19 3lgn-a1-m1-cA 110 83 0.2020 0.1818 0.2410 0.009 3lgn-a1-m1-cB_3lgn-a1-m1-cA
20 2zdo-a2-m1-cC 108 95 0.2222 0.2037 0.2316 0.009 2zdo-a2-m1-cC_2zdo-a2-m1-cD
21 2zdo-a2-m1-cD 109 95 0.2222 0.2018 0.2316 0.010 2zdo-a2-m1-cC_2zdo-a2-m1-cD
22 1tz0-a1-m1-cA 106 81 0.2121 0.1981 0.2593 0.037 1tz0-a1-m1-cC_1tz0-a1-m1-cA
23 1tz0-a1-m1-cC 99 64 0.1717 0.1717 0.2656 0.75 1tz0-a1-m1-cC_1tz0-a1-m1-cA
24 3bm7-a1-m2-cA 102 56 0.1919 0.1863 0.3393 1.1 3bm7-a1-m1-cA_3bm7-a1-m2-cA
25 3bm7-a1-m1-cA 102 56 0.1919 0.1863 0.3393 1.1 3bm7-a1-m1-cA_3bm7-a1-m2-cA
26 5w25-a3-m1-cB 566 40 0.1515 0.0265 0.3750 3.3 5w25-a3-m1-cB_5w25-a3-m1-cA
27 5w25-a3-m1-cA 583 40 0.1515 0.0257 0.3750 3.7 5w25-a3-m1-cB_5w25-a3-m1-cA
28 4rmf-a1-m2-cA 579 40 0.1515 0.0259 0.3750 3.8 4rmf-a1-m1-cA_4rmf-a1-m2-cA
29 4rmf-a1-m1-cA 579 40 0.1515 0.0259 0.3750 3.8 4rmf-a1-m1-cA_4rmf-a1-m2-cA
30 7opq-a1-m1-cA 212 45 0.1212 0.0566 0.2667 8.3 7opq-a1-m1-cB_7opq-a1-m1-cA
31 7opq-a1-m1-cB 204 45 0.1212 0.0588 0.2667 8.7 7opq-a1-m1-cB_7opq-a1-m1-cA
32 3dz8-a1-m2-cA 178 38 0.1111 0.0618 0.2895 8.7 3dz8-a1-m1-cA_3dz8-a1-m2-cA
33 3dz8-a1-m1-cA 178 38 0.1111 0.0618 0.2895 8.7 3dz8-a1-m1-cA_3dz8-a1-m2-cA

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Reference:
Jacob Schwartz et al.

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