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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=85)
QAMTKTLRTPEHVYLCQRLRQARLDAGLTQADLAERLDKPQSFVAKVETRERRLDVIEFA
KWMAACEGLDVVSEIVATIAEGRAQ

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3eus-a1-m1-cA 85 85 1.0000 1.0000 1.0000 4.44e-58 3eus-a1-m1-cB_3eus-a1-m1-cA
2 3eus-a1-m1-cB 77 77 0.9059 1.0000 1.0000 5.31e-52 3eus-a1-m1-cB_3eus-a1-m1-cA
3 3f6w-a5-m1-cD 80 56 0.3647 0.3875 0.5536 1.82e-13 3f6w-a5-m1-cC_3f6w-a5-m1-cD
4 3f6w-a5-m1-cC 80 56 0.3647 0.3875 0.5536 1.82e-13 3f6w-a5-m1-cC_3f6w-a5-m1-cD
5 3f6w-a3-m3-cD 80 56 0.3647 0.3875 0.5536 1.82e-13 3f6w-a3-m1-cB_3f6w-a3-m3-cD
6 3f6w-a3-m1-cB 80 56 0.3647 0.3875 0.5536 1.82e-13 3f6w-a3-m1-cB_3f6w-a3-m3-cD
7 2ef8-a1-m1-cA 83 54 0.2588 0.2651 0.4074 3.83e-05 2ef8-a1-m1-cB_2ef8-a1-m1-cA
8 2ef8-a1-m1-cB 82 54 0.2588 0.2683 0.4074 4.22e-05 2ef8-a1-m1-cB_2ef8-a1-m1-cA
9 1y7y-a1-m1-cA 69 55 0.2118 0.2609 0.3273 0.063 1y7y-a1-m1-cB_1y7y-a1-m1-cA
10 1y7y-a1-m1-cB 66 55 0.2118 0.2727 0.3273 0.067 1y7y-a1-m1-cB_1y7y-a1-m1-cA
11 3zkc-a1-m1-cA 61 57 0.1882 0.2623 0.2807 0.10 3zkc-a1-m1-cA_3zkc-a1-m1-cB
12 3zkc-a1-m1-cB 63 57 0.1882 0.2540 0.2807 0.13 3zkc-a1-m1-cA_3zkc-a1-m1-cB
13 4ghj-a1-m1-cA 71 43 0.1882 0.2254 0.3721 0.40 4ghj-a1-m1-cA_4ghj-a1-m1-cB
14 4ghj-a1-m1-cB 74 43 0.1882 0.2162 0.3721 0.45 4ghj-a1-m1-cA_4ghj-a1-m1-cB
15 1b0n-a6-m3-cA 103 57 0.1882 0.1553 0.2807 0.80 1b0n-a6-m1-cA_1b0n-a6-m3-cA
16 1b0n-a6-m1-cA 103 57 0.1882 0.1553 0.2807 0.80 1b0n-a6-m1-cA_1b0n-a6-m3-cA
17 1b0n-a5-m2-cA 103 57 0.1882 0.1553 0.2807 0.80 1b0n-a5-m1-cA_1b0n-a5-m2-cA
18 1b0n-a5-m1-cA 103 57 0.1882 0.1553 0.2807 0.80 1b0n-a5-m1-cA_1b0n-a5-m2-cA
19 7t8i-a1-m1-cB 64 39 0.1647 0.2188 0.3590 1.7 7t8i-a1-m1-cA_7t8i-a1-m1-cB
20 4zos-a2-m1-cB 97 22 0.1059 0.0928 0.4091 3.0 4zos-a2-m1-cB_4zos-a2-m1-cA
21 4zos-a2-m1-cA 105 22 0.1059 0.0857 0.4091 3.7 4zos-a2-m1-cB_4zos-a2-m1-cA
22 2ia0-a1-m1-cB 153 24 0.1412 0.0784 0.5000 5.6 2ia0-a1-m1-cB_2ia0-a1-m1-cA
23 2ia0-a1-m1-cA 156 26 0.1412 0.0769 0.4615 5.7 2ia0-a1-m1-cB_2ia0-a1-m1-cA
24 3syi-a1-m2-cA 421 31 0.0941 0.0190 0.2581 6.9 3syi-a1-m1-cA_3syi-a1-m2-cA
25 3syi-a1-m1-cA 421 31 0.0941 0.0190 0.2581 6.9 3syi-a1-m1-cA_3syi-a1-m2-cA
26 3sy4-a1-m2-cA 421 31 0.0941 0.0190 0.2581 6.9 3sy4-a1-m1-cA_3sy4-a1-m2-cA
27 3sy4-a1-m1-cA 421 31 0.0941 0.0190 0.2581 6.9 3sy4-a1-m1-cA_3sy4-a1-m2-cA
28 3sx6-a1-m2-cA 421 31 0.0941 0.0190 0.2581 6.9 3sx6-a1-m1-cA_3sx6-a1-m2-cA
29 3sx6-a1-m1-cA 421 31 0.0941 0.0190 0.2581 6.9 3sx6-a1-m1-cA_3sx6-a1-m2-cA
30 3kxa-a2-m1-cD 127 28 0.1059 0.0709 0.3214 9.3 3kxa-a2-m1-cD_3kxa-a2-m1-cC
31 3kxa-a2-m1-cC 128 28 0.1059 0.0703 0.3214 9.4 3kxa-a2-m1-cD_3kxa-a2-m1-cC

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Reference:
Jacob Schwartz et al.

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