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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=59)
QCLCVKTTSQVRPRHITSLEVIKAGPHCPTAQLIATLKNGRKICLDLQALLYKKIIKEH

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4hsv-a1-m1-cD 65 59 1.0000 0.9077 1.0000 5.23e-38 4hsv-a1-m1-cA_4hsv-a1-m1-cD, 4hsv-a1-m1-cC_4hsv-a1-m1-cD
2 4hsv-a1-m1-cA 65 59 1.0000 0.9077 1.0000 5.23e-38 4hsv-a1-m1-cA_4hsv-a1-m1-cD
3 4hsv-a1-m1-cC 59 59 1.0000 1.0000 1.0000 6.35e-38 4hsv-a1-m1-cC_4hsv-a1-m1-cD
4 1f9q-a1-m1-cC 62 58 0.9492 0.9032 0.9655 3.89e-35 1f9q-a1-m1-cB_1f9q-a1-m1-cC
5 1f9q-a1-m1-cB 62 58 0.9492 0.9032 0.9655 3.89e-35 1f9q-a1-m1-cB_1f9q-a1-m1-cC
6 4r9y-a1-m1-cD 65 58 0.9492 0.8615 0.9655 4.40e-35 4r9y-a1-m1-cB_4r9y-a1-m1-cD
7 4r9y-a1-m1-cB 65 58 0.9492 0.8615 0.9655 4.40e-35 4r9y-a1-m1-cB_4r9y-a1-m1-cD
8 4r9w-a1-m2-cB 64 58 0.9492 0.8750 0.9655 4.47e-35 4r9w-a1-m1-cA_4r9w-a1-m2-cB, 4r9w-a1-m2-cA_4r9w-a1-m2-cB
9 4r9w-a1-m2-cA 62 58 0.9492 0.9032 0.9655 4.74e-35 4r9w-a1-m2-cA_4r9w-a1-m2-cB
10 4r9w-a1-m1-cA 62 58 0.9492 0.9032 0.9655 4.74e-35 4r9w-a1-m1-cA_4r9w-a1-m2-cB
11 1pfn-a1-m1-cD 68 58 0.9153 0.7941 0.9310 9.77e-34 1pfn-a1-m1-cB_1pfn-a1-m1-cD
12 1pfn-a1-m1-cC 68 58 0.9153 0.7941 0.9310 9.77e-34 1pfn-a1-m1-cB_1pfn-a1-m1-cC
13 1pfn-a1-m1-cB 68 58 0.9153 0.7941 0.9310 9.77e-34 1pfn-a1-m1-cB_1pfn-a1-m1-cC, 1pfn-a1-m1-cB_1pfn-a1-m1-cD
14 1plf-a1-m1-cC 63 58 0.7288 0.6825 0.7414 4.19e-25 1plf-a1-m1-cA_1plf-a1-m1-cC, 1plf-a1-m1-cC_1plf-a1-m1-cD
15 1plf-a1-m1-cA 63 58 0.7288 0.6825 0.7414 4.19e-25 1plf-a1-m1-cA_1plf-a1-m1-cC, 1plf-a1-m1-cA_1plf-a1-m1-cD
16 1plf-a1-m1-cD 65 57 0.7288 0.6615 0.7544 4.23e-25 1plf-a1-m1-cA_1plf-a1-m1-cD, 1plf-a1-m1-cB_1plf-a1-m1-cD, 1plf-a1-m1-cC_1plf-a1-m1-cD
17 1plf-a1-m1-cB 65 57 0.7288 0.6615 0.7544 4.23e-25 1plf-a1-m1-cB_1plf-a1-m1-cD
18 1tvx-a1-m1-cD 71 58 0.5593 0.4648 0.5690 1.15e-17 1tvx-a1-m1-cB_1tvx-a1-m1-cD, 1tvx-a1-m1-cC_1tvx-a1-m1-cD
19 1tvx-a1-m1-cB 71 58 0.5593 0.4648 0.5690 1.15e-17 1tvx-a1-m1-cB_1tvx-a1-m1-cD
20 1tvx-a1-m1-cC 64 58 0.5593 0.5156 0.5690 1.31e-17 1tvx-a1-m1-cA_1tvx-a1-m1-cC, 1tvx-a1-m1-cC_1tvx-a1-m1-cD
21 1tvx-a1-m1-cA 64 58 0.5593 0.5156 0.5690 1.31e-17 1tvx-a1-m1-cA_1tvx-a1-m1-cC
22 2mgs-a1-m1-cB 71 58 0.4237 0.3521 0.4310 1.49e-14 2mgs-a1-m1-cA_2mgs-a1-m1-cB
23 2mgs-a1-m1-cA 71 58 0.4237 0.3521 0.4310 1.49e-14 2mgs-a1-m1-cA_2mgs-a1-m1-cB
24 3n52-a3-m1-cC 67 58 0.4746 0.4179 0.4828 3.36e-13 3n52-a3-m1-cC_3n52-a3-m1-cD
25 3n52-a3-m1-cD 70 58 0.4746 0.4000 0.4828 3.38e-13 3n52-a3-m1-cC_3n52-a3-m1-cD, 3n52-a3-m1-cD_3n52-a3-m1-cB
26 1mi2-a1-m1-cB 73 58 0.4746 0.3836 0.4828 3.40e-13 1mi2-a1-m1-cA_1mi2-a1-m1-cB
27 1mi2-a1-m1-cA 73 58 0.4746 0.3836 0.4828 3.40e-13 1mi2-a1-m1-cA_1mi2-a1-m1-cB
28 3n52-a3-m1-cB 71 58 0.4746 0.3944 0.4828 3.66e-13 3n52-a3-m1-cD_3n52-a3-m1-cB
29 1msh-a1-m1-cB 72 58 0.4407 0.3611 0.4483 6.40e-13 1msh-a1-m1-cA_1msh-a1-m1-cB
30 1msh-a1-m1-cA 72 58 0.4407 0.3611 0.4483 6.40e-13 1msh-a1-m1-cA_1msh-a1-m1-cB
31 6wzj-a1-m1-cE 63 56 0.4237 0.3968 0.4464 6.35e-12 6wzj-a1-m1-cF_6wzj-a1-m1-cE
32 1rod-a1-m1-cB 72 59 0.4237 0.3472 0.4237 8.39e-12 1rod-a1-m1-cA_1rod-a1-m1-cB
33 1rod-a1-m1-cA 72 59 0.4237 0.3472 0.4237 8.39e-12 1rod-a1-m1-cA_1rod-a1-m1-cB
34 6wzk-a1-m1-cF 64 58 0.4068 0.3750 0.4138 4.23e-11 6wzk-a1-m1-cE_6wzk-a1-m1-cF
35 6wzk-a1-m1-cE 64 58 0.4068 0.3750 0.4138 4.23e-11 6wzk-a1-m1-cE_6wzk-a1-m1-cF
36 6wzj-a1-m1-cF 59 56 0.4237 0.4237 0.4464 2.82e-09 6wzj-a1-m1-cF_6wzj-a1-m1-cE
37 1qe6-a3-m2-cA 68 58 0.3390 0.2941 0.3448 1.22e-08 1qe6-a3-m2-cA_1qe6-a3-m2-cB
38 1qe6-a3-m2-cB 71 58 0.3390 0.2817 0.3448 1.24e-08 1qe6-a3-m2-cA_1qe6-a3-m2-cB, 1qe6-a3-m2-cB_1qe6-a3-m1-cD
39 1qe6-a3-m1-cD 72 58 0.3390 0.2778 0.3448 1.24e-08 1qe6-a3-m2-cB_1qe6-a3-m1-cD
40 1o7y-a1-m1-cD 62 59 0.3729 0.3548 0.3729 3.64e-07 1o7y-a1-m1-cD_1o7y-a1-m1-cC
41 1o7y-a1-m1-cC 63 59 0.3729 0.3492 0.3729 3.84e-07 1o7y-a1-m1-cB_1o7y-a1-m1-cC, 1o7y-a1-m1-cC_1o7y-a1-m1-cA, 1o7y-a1-m1-cD_1o7y-a1-m1-cC
42 1o7y-a1-m1-cA 67 59 0.3729 0.3284 0.3729 4.28e-07 1o7y-a1-m1-cC_1o7y-a1-m1-cA
43 1o7y-a1-m1-cB 62 58 0.3729 0.3548 0.3793 4.88e-07 1o7y-a1-m1-cB_1o7y-a1-m1-cC
44 2r3z-a1-m1-cD 64 59 0.3559 0.3281 0.3559 5.97e-04 2r3z-a1-m1-cD_2r3z-a1-m1-cA
45 2r3z-a1-m1-cB 67 59 0.3559 0.3134 0.3559 6.90e-04 2r3z-a1-m1-cB_2r3z-a1-m1-cA
46 2r3z-a1-m1-cA 68 59 0.3559 0.3088 0.3559 7.34e-04 2r3z-a1-m1-cB_2r3z-a1-m1-cA, 2r3z-a1-m1-cD_2r3z-a1-m1-cA
47 4mhe-a2-m1-cB 69 57 0.2881 0.2464 0.2982 0.025 4mhe-a2-m1-cC_4mhe-a2-m1-cB
48 4mhe-a2-m1-cC 61 57 0.2881 0.2787 0.2982 0.028 4mhe-a2-m1-cC_4mhe-a2-m1-cB
49 3wvr-a2-m1-cB 426 32 0.1864 0.0258 0.3438 0.87 3wvr-a2-m1-cB_3wvr-a2-m1-cC
50 3wvr-a2-m1-cC 429 32 0.1864 0.0256 0.3438 0.87 3wvr-a2-m1-cB_3wvr-a2-m1-cC
51 2boy-a4-m1-cD 251 21 0.1695 0.0398 0.4762 3.5 2boy-a4-m1-cH_2boy-a4-m1-cD
52 4xc6-a1-m1-cB 1061 25 0.1864 0.0104 0.4400 4.0 4xc6-a1-m1-cB_4xc6-a1-m1-cA
53 4xc6-a1-m1-cA 1067 25 0.1864 0.0103 0.4400 4.0 4xc6-a1-m1-cB_4xc6-a1-m1-cA
54 6r72-a2-m1-cC 565 19 0.1864 0.0195 0.5789 4.3 6r72-a2-m1-cC_6r72-a2-m1-cD
55 6r72-a2-m1-cD 572 19 0.1864 0.0192 0.5789 4.3 6r72-a2-m1-cC_6r72-a2-m1-cD

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Reference:
Jacob Schwartz et al.

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