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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=98)
QELTFGGFTLTREGLLSSQDKEVILSPTENKILSILLMHPKQVVSKESLLEKLWENDSFI
DQNTLNVNMTRLRKKIVPIGFDYIHTVRGVGYLLQNDP

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5dcm-a1-m1-cB 98 98 1.0000 1.0000 1.0000 2.15e-68 5dcm-a1-m1-cA_5dcm-a1-m1-cB
2 5dcm-a1-m1-cA 97 97 0.9796 0.9897 0.9897 7.50e-65 5dcm-a1-m1-cA_5dcm-a1-m1-cB
3 3q9v-a1-m2-cB 99 98 0.3265 0.3232 0.3265 2.49e-12 3q9v-a1-m1-cA_3q9v-a1-m2-cB
4 3q9v-a1-m1-cA 98 98 0.3265 0.3265 0.3265 2.71e-12 3q9v-a1-m1-cA_3q9v-a1-m2-cB
5 5za3-a1-m1-cA 101 77 0.3367 0.3267 0.4286 3.80e-12 5za3-a1-m1-cB_5za3-a1-m1-cA
6 5za3-a1-m1-cB 100 77 0.3367 0.3300 0.4286 3.97e-12 5za3-a1-m1-cB_5za3-a1-m1-cA
7 1ys7-a1-m1-cB 226 74 0.2857 0.1239 0.3784 8.18e-10 1ys7-a1-m1-cA_1ys7-a1-m1-cB
8 1ys7-a1-m1-cA 224 74 0.2959 0.1295 0.3919 1.02e-08 1ys7-a1-m1-cA_1ys7-a1-m1-cB
9 6kyx-a1-m2-cA 100 91 0.2857 0.2800 0.3077 1.37e-08 6kyx-a1-m1-cA_6kyx-a1-m2-cA
10 6kyx-a1-m1-cA 100 91 0.2857 0.2800 0.3077 1.37e-08 6kyx-a1-m1-cA_6kyx-a1-m2-cA
11 3r0j-a1-m1-cA 221 73 0.2755 0.1222 0.3699 4.21e-08 3r0j-a1-m1-cB_3r0j-a1-m1-cA
12 5ed4-a2-m1-cF 214 73 0.2755 0.1262 0.3699 4.23e-08 5ed4-a2-m1-cF_5ed4-a2-m1-cE
13 3r0j-a1-m1-cB 218 73 0.2755 0.1239 0.3699 4.34e-08 3r0j-a1-m1-cB_3r0j-a1-m1-cA
14 5u8m-a1-m1-cB 229 74 0.2959 0.1266 0.3919 4.68e-08 5u8m-a1-m1-cA_5u8m-a1-m1-cB
15 5u8m-a1-m1-cA 229 74 0.2959 0.1266 0.3919 4.68e-08 5u8m-a1-m1-cA_5u8m-a1-m1-cB
16 5ed4-a2-m1-cE 224 73 0.2755 0.1205 0.3699 4.98e-08 5ed4-a2-m1-cF_5ed4-a2-m1-cE
17 4s04-a2-m1-cF 219 73 0.2959 0.1324 0.3973 1.14e-07 4s04-a2-m1-cE_4s04-a2-m1-cF
18 4s04-a2-m1-cE 219 73 0.2959 0.1324 0.3973 1.14e-07 4s04-a2-m1-cE_4s04-a2-m1-cF
19 6lxm-a2-m1-cA 100 100 0.2959 0.2900 0.2900 2.76e-07 6lxm-a2-m1-cA_6lxm-a2-m1-cB
20 6lxn-a1-m1-cB 101 100 0.2959 0.2871 0.2900 2.82e-07 6lxn-a1-m1-cB_6lxn-a1-m1-cA
21 6lxm-a2-m1-cB 101 100 0.2959 0.2871 0.2900 2.82e-07 6lxm-a2-m1-cA_6lxm-a2-m1-cB
22 6lxn-a1-m1-cA 110 100 0.2959 0.2636 0.2900 4.22e-07 6lxn-a1-m1-cB_6lxn-a1-m1-cA
23 2pmu-a1-m1-cD 96 94 0.3163 0.3229 0.3298 5.57e-07 2pmu-a1-m1-cC_2pmu-a1-m1-cD
24 6zwt-a2-m1-cD 99 91 0.2959 0.2929 0.3187 9.56e-07 6zwt-a2-m1-cB_6zwt-a2-m1-cD
25 6zwt-a2-m1-cB 99 91 0.2959 0.2929 0.3187 9.56e-07 6zwt-a2-m1-cB_6zwt-a2-m1-cD
26 2oqr-a1-m2-cA 226 69 0.2449 0.1062 0.3478 2.03e-06 2oqr-a1-m1-cA_2oqr-a1-m2-cA
27 2oqr-a1-m1-cA 226 69 0.2449 0.1062 0.3478 2.03e-06 2oqr-a1-m1-cA_2oqr-a1-m2-cA
28 5x5l-a1-m1-cA 95 73 0.2551 0.2632 0.3425 3.19e-06 5x5l-a1-m1-cA_5x5l-a1-m1-cE
29 5x5l-a1-m1-cE 98 73 0.2551 0.2551 0.3425 3.48e-06 5x5l-a1-m1-cA_5x5l-a1-m1-cE
30 4b09-a1-m1-cA 216 83 0.2551 0.1157 0.3012 5.77e-06 4b09-a1-m1-cB_4b09-a1-m1-cA
31 4b09-a1-m1-cB 214 83 0.2551 0.1168 0.3012 5.78e-06 4b09-a1-m1-cB_4b09-a1-m1-cA
32 2pmu-a1-m1-cC 92 94 0.3061 0.3261 0.3191 1.19e-05 2pmu-a1-m1-cC_2pmu-a1-m1-cD
33 4kfc-a1-m1-cB 224 75 0.2245 0.0982 0.2933 4.76e-05 4kfc-a1-m1-cA_4kfc-a1-m1-cB
34 4kfc-a1-m1-cA 223 75 0.2245 0.0987 0.2933 5.14e-05 4kfc-a1-m1-cA_4kfc-a1-m1-cB
35 7e1f-a1-m1-cA 95 73 0.2143 0.2211 0.2877 4.29e-04 7e1f-a1-m1-cB_7e1f-a1-m1-cA
36 7e1f-a1-m1-cB 93 73 0.2143 0.2258 0.2877 4.76e-04 7e1f-a1-m1-cB_7e1f-a1-m1-cA
37 3crj-a2-m1-cD 184 36 0.1122 0.0598 0.3056 0.42 3crj-a2-m1-cC_3crj-a2-m1-cD
38 3crj-a2-m1-cC 174 36 0.1122 0.0632 0.3056 0.46 3crj-a2-m1-cC_3crj-a2-m1-cD
39 3iwf-a1-m1-cA 87 58 0.1735 0.1954 0.2931 2.1 3iwf-a1-m1-cA_3iwf-a1-m1-cB
40 3iwf-a1-m1-cB 88 58 0.1735 0.1932 0.2931 2.2 3iwf-a1-m1-cA_3iwf-a1-m1-cB
41 6p9u-a4-m5-cH 248 98 0.2653 0.1048 0.2653 5.8 6p9u-a4-m5-cH_6p9u-a4-m1-cH
42 6p9u-a4-m1-cH 248 98 0.2653 0.1048 0.2653 5.8 6p9u-a4-m5-cH_6p9u-a4-m1-cH
43 1rd3-a1-m1-cD 258 98 0.2653 0.1008 0.2653 5.9 1rd3-a1-m1-cD_1rd3-a1-m1-cB
44 1xmn-a1-m1-cB 256 98 0.2653 0.1016 0.2653 6.0 1xmn-a1-m1-cD_1xmn-a1-m1-cB
45 1xmn-a1-m1-cD 254 98 0.2653 0.1024 0.2653 6.1 1xmn-a1-m1-cD_1xmn-a1-m1-cB
46 1ths-a2-m2-cH 252 98 0.2653 0.1032 0.2653 6.2 1ths-a2-m2-cH_1ths-a2-m1-cH
47 1ths-a2-m1-cH 252 98 0.2653 0.1032 0.2653 6.2 1ths-a2-m2-cH_1ths-a2-m1-cH
48 1rd3-a1-m1-cB 259 98 0.2653 0.1004 0.2653 6.4 1rd3-a1-m1-cD_1rd3-a1-m1-cB
49 3mkq-a1-m1-cC 811 71 0.1939 0.0234 0.2676 6.9 3mkq-a1-m1-cE_3mkq-a1-m1-cC
50 3mkq-a1-m1-cE 810 71 0.1939 0.0235 0.2676 7.1 3mkq-a1-m1-cE_3mkq-a1-m1-cC
51 2a0q-a3-m1-cB 242 98 0.2653 0.1074 0.2653 7.5 2a0q-a3-m1-cD_2a0q-a3-m1-cB
52 2hwl-a1-m1-cD 251 98 0.2653 0.1036 0.2653 8.4 2hwl-a1-m1-cD_2hwl-a1-m1-cB
53 2hwl-a1-m1-cB 251 98 0.2653 0.1036 0.2653 8.4 2hwl-a1-m1-cD_2hwl-a1-m1-cB
54 2a0q-a3-m1-cD 245 98 0.2653 0.1061 0.2653 8.6 2a0q-a3-m1-cD_2a0q-a3-m1-cB
55 1sg8-a3-m2-cE 251 98 0.2653 0.1036 0.2653 9.1 1sg8-a3-m2-cE_1sg8-a3-m1-cB
56 1sg8-a3-m1-cB 251 98 0.2653 0.1036 0.2653 9.1 1sg8-a3-m2-cE_1sg8-a3-m1-cB

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Reference:
Jacob Schwartz et al.

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