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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=84)
QGMSDAFTDVAKMKKIKEEIKAHEGQVVEMTLEKNRLGKLIEVYPSLFIVEFGDVEGDKQ
VNVYVESFTYSDILTEKNLIHYLD

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3fb9-a1-m1-cB 84 84 1.0000 1.0000 1.0000 3.05e-57 3fb9-a1-m1-cB_3fb9-a1-m1-cA
2 3fb9-a1-m1-cA 89 89 0.9881 0.9326 0.9326 9.62e-54 3fb9-a1-m1-cB_3fb9-a1-m1-cA
3 1twf-a2-m2-cB 1094 54 0.2143 0.0165 0.3333 3.1 1twf-a2-m1-cB_1twf-a2-m2-cB
4 1twf-a2-m1-cB 1094 54 0.2143 0.0165 0.3333 3.1 1twf-a2-m1-cB_1twf-a2-m2-cB
5 6byg-a1-m1-cB 858 44 0.1905 0.0186 0.3636 4.6 6byg-a1-m1-cA_6byg-a1-m1-cB
6 3t1p-a1-m3-cA 371 38 0.2024 0.0458 0.4474 6.0 3t1p-a1-m2-cA_3t1p-a1-m3-cA
7 3t1p-a1-m2-cA 371 38 0.2024 0.0458 0.4474 6.0 3t1p-a1-m2-cA_3t1p-a1-m3-cA
8 1oph-a2-m2-cA 375 28 0.1667 0.0373 0.5000 6.0 1oph-a2-m1-cA_1oph-a2-m2-cA
9 1oph-a2-m1-cA 375 28 0.1667 0.0373 0.5000 6.0 1oph-a2-m1-cA_1oph-a2-m2-cA
10 2qkp-a2-m1-cD 134 46 0.1667 0.1045 0.3043 6.5 2qkp-a2-m1-cD_2qkp-a2-m1-cC
11 1hp7-a3-m3-cA 376 28 0.1667 0.0372 0.5000 6.5 1hp7-a3-m1-cA_1hp7-a3-m3-cA
12 1hp7-a3-m1-cA 376 28 0.1667 0.0372 0.5000 6.5 1hp7-a3-m1-cA_1hp7-a3-m3-cA
13 1hp7-a2-m2-cA 376 28 0.1667 0.0372 0.5000 6.5 1hp7-a2-m1-cA_1hp7-a2-m2-cA
14 1hp7-a2-m1-cA 376 28 0.1667 0.0372 0.5000 6.5 1hp7-a2-m1-cA_1hp7-a2-m2-cA
15 5ikx-a1-m1-cB 569 60 0.2024 0.0299 0.2833 6.7 5ikx-a1-m1-cA_5ikx-a1-m1-cB
16 5ikx-a1-m1-cA 569 60 0.2024 0.0299 0.2833 6.7 5ikx-a1-m1-cA_5ikx-a1-m1-cB
17 2qkp-a2-m1-cC 138 46 0.1667 0.1014 0.3043 6.8 2qkp-a2-m1-cD_2qkp-a2-m1-cC
18 3uun-a3-m1-cB 114 33 0.0952 0.0702 0.2424 6.8 3uun-a3-m1-cB_3uun-a3-m1-cA
19 3uun-a3-m1-cA 116 33 0.0952 0.0690 0.2424 7.6 3uun-a3-m1-cB_3uun-a3-m1-cA
20 2igb-a1-m2-cB 173 61 0.1905 0.0925 0.2623 7.9 2igb-a1-m1-cB_2igb-a1-m2-cB, 2igb-a1-m2-cA_2igb-a1-m2-cB
21 2igb-a1-m1-cB 173 61 0.1905 0.0925 0.2623 7.9 2igb-a1-m1-cB_2igb-a1-m2-cB
22 2igb-a1-m2-cA 172 61 0.1905 0.0930 0.2623 8.0 2igb-a1-m2-cA_2igb-a1-m2-cB
23 6byg-a1-m1-cA 856 46 0.1905 0.0187 0.3478 8.7 6byg-a1-m1-cA_6byg-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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