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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=85)
QIEVGPGATNATINFEAGILECYERFSWQRALDYPGQDRLHRLKRKLESRIKTHNKSEPE
NKRMSLEERKAIGVKMMKVLLFMDP

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1xeq-a2-m2-cB 85 85 1.0000 1.0000 1.0000 9.89e-61 1xeq-a2-m1-cB_1xeq-a2-m2-cB
2 1xeq-a2-m1-cB 85 85 1.0000 1.0000 1.0000 9.89e-61 1xeq-a2-m1-cB_1xeq-a2-m2-cB
3 3r66-a1-m1-cB 96 85 1.0000 0.8854 1.0000 1.18e-60 3r66-a1-m1-cA_3r66-a1-m1-cB
4 3r66-a1-m1-cA 96 85 1.0000 0.8854 1.0000 1.18e-60 3r66-a1-m1-cA_3r66-a1-m1-cB
5 1xeq-a2-m2-cA 89 79 0.9294 0.8876 1.0000 1.31e-55 1xeq-a2-m1-cA_1xeq-a2-m2-cA
6 1xeq-a2-m1-cA 89 79 0.9294 0.8876 1.0000 1.31e-55 1xeq-a2-m1-cA_1xeq-a2-m2-cA
7 3w2w-a2-m2-cB 308 31 0.1529 0.0422 0.4194 2.0 3w2w-a2-m1-cB_3w2w-a2-m2-cB
8 3w2w-a2-m1-cB 308 31 0.1529 0.0422 0.4194 2.0 3w2w-a2-m1-cB_3w2w-a2-m2-cB
9 2imi-a1-m1-cB 220 45 0.1647 0.0636 0.3111 3.8 2imi-a1-m1-cA_2imi-a1-m1-cB
10 2imi-a1-m1-cA 220 45 0.1647 0.0636 0.3111 4.0 2imi-a1-m1-cA_2imi-a1-m1-cB
11 3wmd-a1-m1-cA 144 44 0.1647 0.0972 0.3182 9.3 3wmd-a1-m1-cA_3wmd-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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