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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=92)
QIQLWQFLLELLSDSSNSSCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRAL
RYYYDKNIMTKVHGKRYAYKFDFHGIAQALQP

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5ybc-a1-m1-cA 92 92 1.0000 1.0000 1.0000 1.66e-67 5ybc-a1-m1-cC_5ybc-a1-m1-cA
2 5e8i-a2-m1-cJ 93 92 0.9783 0.9677 0.9783 1.02e-66 5e8i-a2-m1-cD_5e8i-a2-m1-cJ
3 5e8i-a2-m1-cD 93 92 0.9783 0.9677 0.9783 1.02e-66 5e8i-a2-m1-cD_5e8i-a2-m1-cJ
4 5ybc-a1-m1-cC 91 91 0.9891 1.0000 1.0000 2.07e-66 5ybc-a1-m1-cC_5ybc-a1-m1-cA
5 2ypr-a1-m1-cA 96 92 0.8478 0.8125 0.8478 8.57e-59 2ypr-a1-m1-cB_2ypr-a1-m1-cA
6 2ypr-a1-m1-cB 92 92 0.8478 0.8478 0.8478 9.13e-59 2ypr-a1-m1-cB_2ypr-a1-m1-cA
7 2nny-a1-m1-cB 129 80 0.6196 0.4419 0.7125 7.92e-39 2nny-a1-m1-cA_2nny-a1-m1-cB
8 2nny-a1-m1-cA 129 80 0.6196 0.4419 0.7125 7.92e-39 2nny-a1-m1-cA_2nny-a1-m1-cB
9 3wu0-a1-m1-cB 136 80 0.6196 0.4191 0.7125 4.36e-38 3wu0-a1-m1-cB_3wu0-a1-m1-cA
10 6dat-a2-m1-cD 135 80 0.6196 0.4222 0.7125 4.58e-38 6dat-a2-m1-cC_6dat-a2-m1-cD
11 6dat-a2-m1-cC 135 80 0.6196 0.4222 0.7125 4.58e-38 6dat-a2-m1-cC_6dat-a2-m1-cD
12 3wu0-a1-m1-cA 140 80 0.6196 0.4071 0.7125 5.07e-38 3wu0-a1-m1-cB_3wu0-a1-m1-cA
13 1gvj-a1-m1-cA 141 80 0.6196 0.4043 0.7125 6.22e-38 1gvj-a1-m1-cA_1gvj-a1-m1-cB
14 1gvj-a1-m1-cB 146 80 0.6196 0.3904 0.7125 6.46e-38 1gvj-a1-m1-cA_1gvj-a1-m1-cB
15 5ilv-a2-m2-cA 92 80 0.5435 0.5435 0.6250 2.23e-34 5ilv-a2-m1-cA_5ilv-a2-m2-cA
16 5ilv-a2-m1-cA 92 80 0.5435 0.5435 0.6250 2.23e-34 5ilv-a2-m1-cA_5ilv-a2-m2-cA
17 4uuv-a2-m1-cG 95 80 0.5326 0.5158 0.6125 2.02e-33 4uuv-a2-m1-cD_4uuv-a2-m1-cG
18 4uuv-a2-m1-cD 95 80 0.5326 0.5158 0.6125 2.02e-33 4uuv-a2-m1-cD_4uuv-a2-m1-cG
19 1dux-a1-m1-cF 86 81 0.5435 0.5814 0.6173 2.34e-32 1dux-a1-m1-cC_1dux-a1-m1-cF
20 1dux-a1-m1-cC 86 81 0.5435 0.5814 0.6173 2.34e-32 1dux-a1-m1-cC_1dux-a1-m1-cF
21 2pnf-a1-m2-cB 248 54 0.1413 0.0524 0.2407 3.2 2pnf-a1-m1-cB_2pnf-a1-m2-cB, 2pnf-a1-m2-cA_2pnf-a1-m2-cB
22 2pnf-a1-m2-cA 248 54 0.1413 0.0524 0.2407 3.2 2pnf-a1-m2-cA_2pnf-a1-m2-cB
23 2pnf-a1-m1-cB 248 54 0.1413 0.0524 0.2407 3.2 2pnf-a1-m1-cB_2pnf-a1-m2-cB
24 8em7-a1-m1-cB 4378 29 0.1087 0.0023 0.3448 6.4 8em7-a1-m1-cA_8em7-a1-m1-cB
25 8em7-a1-m1-cA 4378 29 0.1087 0.0023 0.3448 6.4 8em7-a1-m1-cA_8em7-a1-m1-cB
26 8em4-a1-m1-cB 3818 29 0.1087 0.0026 0.3448 6.7 8em4-a1-m1-cA_8em4-a1-m1-cB
27 8em4-a1-m1-cA 3818 29 0.1087 0.0026 0.3448 6.7 8em4-a1-m1-cA_8em4-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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