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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=71)
QIYYSDKYDDEEFEYRHVMLPKDIAKLVPKTHLMSESEWRNLGVQQSQGWVHYMIHEPEP
HILLFRRPLPK

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1dkt-a1-m1-cA 72 71 1.0000 0.9861 1.0000 4.43e-49 1dkt-a1-m1-cB_1dkt-a1-m1-cA
2 1dkt-a1-m1-cB 71 71 1.0000 1.0000 1.0000 5.13e-49 1dkt-a1-m1-cB_1dkt-a1-m1-cA
3 4lpa-a5-m2-cD 112 78 0.5634 0.3571 0.5128 2.22e-24 4lpa-a5-m1-cA_4lpa-a5-m2-cD, 4lpa-a5-m1-cB_4lpa-a5-m2-cD
4 4lpa-a5-m1-cB 112 78 0.5634 0.3571 0.5128 2.22e-24 4lpa-a5-m1-cB_4lpa-a5-m2-cD
5 4lpa-a5-m1-cA 112 78 0.5634 0.3571 0.5128 2.22e-24 4lpa-a5-m1-cA_4lpa-a5-m2-cD
6 1qb3-a5-m3-cB 119 78 0.5634 0.3361 0.5128 3.73e-24 1qb3-a5-m1-cB_1qb3-a5-m3-cB
7 1qb3-a5-m1-cB 119 78 0.5634 0.3361 0.5128 3.73e-24 1qb3-a5-m1-cB_1qb3-a5-m3-cB
8 3qy2-a4-m2-cB 105 78 0.5493 0.3714 0.5000 1.95e-23 3qy2-a4-m1-cB_3qy2-a4-m2-cB
9 3qy2-a4-m1-cB 105 78 0.5493 0.3714 0.5000 1.95e-23 3qy2-a4-m1-cB_3qy2-a4-m2-cB
10 1sce-a2-m1-cB 97 76 0.5493 0.4021 0.5132 4.42e-22 1sce-a2-m1-cA_1sce-a2-m1-cB, 1sce-a2-m1-cB_1sce-a2-m1-cD, 1sce-a2-m1-cB_1sce-a2-m2-cC
11 1sce-a2-m1-cA 97 76 0.5493 0.4021 0.5132 4.42e-22 1sce-a2-m1-cA_1sce-a2-m1-cB, 1sce-a2-m1-cA_1sce-a2-m2-cC
12 1sce-a1-m1-cA 97 76 0.5493 0.4021 0.5132 4.42e-22 1sce-a1-m1-cA_1sce-a1-m1-cC
13 1sce-a2-m1-cD 103 76 0.5493 0.3786 0.5132 4.76e-22 1sce-a2-m1-cB_1sce-a2-m1-cD
14 1sce-a2-m2-cC 111 76 0.5493 0.3514 0.5132 5.05e-22 1sce-a2-m1-cA_1sce-a2-m2-cC, 1sce-a2-m1-cB_1sce-a2-m2-cC
15 1sce-a1-m1-cC 111 76 0.5493 0.3514 0.5132 5.05e-22 1sce-a1-m1-cA_1sce-a1-m1-cC
16 1iip-a3-m4-cA 297 14 0.0986 0.0236 0.5000 4.8 1iip-a3-m1-cA_1iip-a3-m4-cA
17 1iip-a3-m1-cA 297 14 0.0986 0.0236 0.5000 4.8 1iip-a3-m1-cA_1iip-a3-m4-cA
18 1iip-a2-m4-cA 297 14 0.0986 0.0236 0.5000 4.8 1iip-a2-m2-cA_1iip-a2-m4-cA, 1iip-a2-m3-cA_1iip-a2-m4-cA
19 1iip-a2-m3-cA 297 14 0.0986 0.0236 0.5000 4.8 1iip-a2-m3-cA_1iip-a2-m4-cA
20 1iip-a2-m2-cA 297 14 0.0986 0.0236 0.5000 4.8 1iip-a2-m2-cA_1iip-a2-m4-cA

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Reference:
Jacob Schwartz et al.

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