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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=80)
QMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPSLLEDDKEMLEDLVAA
AFNDAARRIEETQKEKMASV

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1pug-a2-m1-cC 80 80 1.0000 1.0000 1.0000 7.33e-54 1pug-a2-m1-cD_1pug-a2-m1-cC
2 1pug-a2-m1-cD 75 75 0.9375 1.0000 1.0000 3.48e-50 1pug-a2-m1-cD_1pug-a2-m1-cC
3 1j8b-a1-m2-cA 85 68 0.7250 0.6824 0.8529 5.65e-33 1j8b-a1-m1-cA_1j8b-a1-m2-cA
4 1j8b-a1-m1-cA 85 68 0.7250 0.6824 0.8529 5.65e-33 1j8b-a1-m1-cA_1j8b-a1-m2-cA
5 5yrx-a1-m2-cA 71 68 0.3250 0.3662 0.3824 2.53e-11 5yrx-a1-m1-cA_5yrx-a1-m2-cA
6 5yrx-a1-m1-cA 71 68 0.3250 0.3662 0.3824 2.53e-11 5yrx-a1-m1-cA_5yrx-a1-m2-cA
7 1ybx-a1-m1-cA 87 73 0.2750 0.2529 0.3014 3.87e-07 1ybx-a1-m1-cA_1ybx-a1-m1-cB
8 1ybx-a1-m1-cB 88 73 0.2750 0.2500 0.3014 4.54e-07 1ybx-a1-m1-cA_1ybx-a1-m1-cB
9 3f42-a1-m2-cB 79 72 0.3125 0.3165 0.3472 0.001 3f42-a1-m2-cB_3f42-a1-m1-cA, 3f42-a1-m2-cB_3f42-a1-m2-cA
10 3f42-a1-m2-cA 87 72 0.3125 0.2874 0.3472 0.001 3f42-a1-m1-cA_3f42-a1-m2-cA, 3f42-a1-m2-cB_3f42-a1-m2-cA
11 3f42-a1-m1-cA 87 72 0.3125 0.2874 0.3472 0.001 3f42-a1-m1-cA_3f42-a1-m2-cA, 3f42-a1-m2-cB_3f42-a1-m1-cA
12 3vv1-a1-m1-cB 140 36 0.1750 0.1000 0.3889 1.1 3vv1-a1-m1-cB_3vv1-a1-m1-cA
13 3vv1-a1-m1-cA 141 36 0.1750 0.0993 0.3889 1.1 3vv1-a1-m1-cB_3vv1-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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