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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=84)
QVRTLFVSGLPMDAKPRELYLLFRGARGYEGALLKMTSKNGKPTSPVGFVTFLSQQDAQD
ARKMLQGVRFDPEAAQVLRLELAK

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5tkz-a1-m1-cB 89 84 1.0000 0.9438 1.0000 3.43e-57 5tkz-a1-m1-cA_5tkz-a1-m1-cB
2 5tkz-a1-m1-cA 89 84 1.0000 0.9438 1.0000 3.43e-57 5tkz-a1-m1-cA_5tkz-a1-m1-cB
3 5bjr-a2-m3-cB 84 84 1.0000 1.0000 1.0000 6.15e-57 5bjr-a2-m1-cB_5bjr-a2-m3-cB
4 5bjr-a2-m1-cB 84 84 1.0000 1.0000 1.0000 6.15e-57 5bjr-a2-m1-cB_5bjr-a2-m3-cB
5 5det-a1-m1-cB 94 84 0.6310 0.5638 0.6310 1.30e-32 5det-a1-m1-cA_5det-a1-m1-cB
6 5det-a1-m1-cA 91 84 0.6310 0.5824 0.6310 1.35e-32 5det-a1-m1-cA_5det-a1-m1-cB
7 5cyj-a1-m1-cB 89 84 0.6310 0.5955 0.6310 2.86e-30 5cyj-a1-m1-cA_5cyj-a1-m1-cB
8 5cyj-a1-m1-cA 89 84 0.6310 0.5955 0.6310 2.86e-30 5cyj-a1-m1-cA_5cyj-a1-m1-cB
9 3md1-a4-m5-cB 79 64 0.2381 0.2532 0.3125 0.027 3md1-a4-m4-cB_3md1-a4-m5-cB
10 3md1-a4-m4-cB 79 64 0.2381 0.2532 0.3125 0.027 3md1-a4-m4-cB_3md1-a4-m5-cB
11 3md3-a2-m2-cA 165 64 0.2381 0.1212 0.3125 0.037 3md3-a2-m1-cA_3md3-a2-m2-cA
12 3md3-a2-m1-cA 165 64 0.2381 0.1212 0.3125 0.037 3md3-a2-m1-cA_3md3-a2-m2-cA
13 5uzg-a1-m1-cA 90 59 0.2143 0.2000 0.3051 0.38 5uzg-a1-m1-cB_5uzg-a1-m1-cA
14 3nnc-a2-m4-cA 175 70 0.2500 0.1200 0.3000 0.49 3nnc-a2-m2-cA_3nnc-a2-m4-cA, 3nnc-a2-m3-cA_3nnc-a2-m4-cA
15 3nnc-a2-m3-cA 175 70 0.2500 0.1200 0.3000 0.49 3nnc-a2-m3-cA_3nnc-a2-m4-cA
16 3nnc-a2-m2-cA 175 70 0.2500 0.1200 0.3000 0.49 3nnc-a2-m2-cA_3nnc-a2-m4-cA
17 5uzg-a1-m1-cB 84 58 0.1905 0.1905 0.2759 1.4 5uzg-a1-m1-cB_5uzg-a1-m1-cA
18 1yt5-a8-m3-cC 252 57 0.1905 0.0635 0.2807 6.7 1yt5-a8-m3-cC_1yt5-a8-m1-cD
19 1yt5-a6-m2-cC 252 57 0.1905 0.0635 0.2807 6.7 1yt5-a6-m2-cC_1yt5-a6-m1-cD
20 1yt5-a4-m3-cC 252 57 0.1905 0.0635 0.2807 6.7 1yt5-a4-m3-cC_1yt5-a4-m3-cB

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Reference:
Jacob Schwartz et al.

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