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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=74)
RFNINDRIKELGMLIPKANDLDVRWNKGTILKASVDYIRRMQKDLQKSRELENHSRRLEM
TNKQLWLRIQELGG

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 7y62-a1-m1-cA 74 74 1.0000 1.0000 1.0000 2.02e-49 7y62-a1-m1-cB_7y62-a1-m1-cA
2 7y62-a1-m1-cB 69 74 0.9324 1.0000 0.9324 3.56e-43 7y62-a1-m1-cB_7y62-a1-m1-cA
3 7d8t-a1-m1-cB 199 73 0.6892 0.2563 0.6986 5.05e-32 7d8t-a1-m1-cA_7d8t-a1-m1-cB
4 7d8t-a1-m1-cA 199 73 0.6892 0.2563 0.6986 5.05e-32 7d8t-a1-m1-cA_7d8t-a1-m1-cB
5 6fx5-a1-m1-cB 74 72 0.6622 0.6622 0.6806 5.84e-30 6fx5-a1-m1-cA_6fx5-a1-m1-cB
6 7eod-a2-m1-cD 69 72 0.6757 0.7246 0.6944 1.88e-29 7eod-a2-m1-cC_7eod-a2-m1-cD
7 7d8r-a2-m1-cD 174 71 0.6486 0.2759 0.6761 8.33e-28 7d8r-a2-m1-cC_7d8r-a2-m1-cD
8 7f09-a2-m1-cC 67 72 0.6622 0.7313 0.6806 9.27e-28 7f09-a2-m1-cD_7f09-a2-m1-cC
9 7d8s-a2-m1-cD 175 73 0.6486 0.2743 0.6575 2.22e-27 7d8s-a2-m1-cD_7d8s-a2-m1-cC
10 6fx5-a1-m1-cA 72 69 0.6216 0.6389 0.6667 2.23e-27 6fx5-a1-m1-cA_6fx5-a1-m1-cB
11 7eod-a2-m1-cC 66 73 0.6622 0.7424 0.6712 4.63e-27 7eod-a2-m1-cC_7eod-a2-m1-cD
12 7d8s-a2-m1-cC 184 73 0.6486 0.2609 0.6575 5.73e-27 7d8s-a2-m1-cD_7d8s-a2-m1-cC
13 7f09-a2-m1-cD 65 72 0.6351 0.7231 0.6528 3.63e-26 7f09-a2-m1-cD_7f09-a2-m1-cC
14 7d8r-a2-m1-cC 168 71 0.5946 0.2619 0.6197 3.24e-23 7d8r-a2-m1-cC_7d8r-a2-m1-cD
15 1am9-a1-m1-cD 76 47 0.2432 0.2368 0.3830 0.003 1am9-a1-m1-cD_1am9-a1-m1-cC
16 1am9-a1-m1-cC 82 47 0.2432 0.2195 0.3830 0.004 1am9-a1-m1-cD_1am9-a1-m1-cC
17 7f2f-a1-m1-cB 94 49 0.2432 0.1915 0.3673 0.12 7f2f-a1-m1-cA_7f2f-a1-m1-cB
18 7f2f-a1-m1-cA 90 50 0.2432 0.2000 0.3600 0.23 7f2f-a1-m1-cA_7f2f-a1-m1-cB
19 4lfi-a1-m1-cB 371 56 0.2297 0.0458 0.3036 1.7 4lfi-a1-m1-cA_4lfi-a1-m1-cB
20 4lfi-a1-m1-cA 370 56 0.2297 0.0459 0.3036 1.8 4lfi-a1-m1-cA_4lfi-a1-m1-cB
21 4ydh-a1-m1-cC 328 38 0.2162 0.0488 0.4211 3.2 4ydh-a1-m1-cC_4ydh-a1-m1-cA
22 4ydh-a1-m1-cA 330 38 0.2162 0.0485 0.4211 3.5 4ydh-a1-m1-cC_4ydh-a1-m1-cA
23 7wuo-a1-m1-cC 201 52 0.2568 0.0945 0.3654 5.2 7wuo-a1-m1-cA_7wuo-a1-m1-cC, 7wuo-a1-m1-cB_7wuo-a1-m1-cC
24 7wuo-a1-m1-cB 201 52 0.2568 0.0945 0.3654 5.2 7wuo-a1-m1-cB_7wuo-a1-m1-cC
25 7wuo-a1-m1-cA 201 52 0.2568 0.0945 0.3654 5.2 7wuo-a1-m1-cA_7wuo-a1-m1-cC
26 1xcc-a1-m1-cC 218 63 0.2703 0.0917 0.3175 6.5 1xcc-a1-m1-cC_1xcc-a1-m1-cA
27 1xcc-a1-m1-cA 219 63 0.2703 0.0913 0.3175 6.5 1xcc-a1-m1-cC_1xcc-a1-m1-cA
28 4ls6-a1-m1-cB 411 16 0.1216 0.0219 0.5625 7.6 4ls6-a1-m1-cA_4ls6-a1-m1-cB
29 4ls6-a1-m1-cA 411 16 0.1216 0.0219 0.5625 7.6 4ls6-a1-m1-cA_4ls6-a1-m1-cB
30 2d52-a1-m1-cB 394 37 0.1622 0.0305 0.3243 8.0 2d52-a1-m1-cB_2d52-a1-m1-cA
31 2d52-a1-m1-cA 404 37 0.1622 0.0297 0.3243 8.0 2d52-a1-m1-cB_2d52-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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