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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=69)
RFNINDRIKELGMLIPKARWNKGTILKASVDYIRRMQKDLQKSRELENHSRRLEMTNKQL
WLRIQELGG

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 7y62-a1-m1-cB 69 69 1.0000 1.0000 1.0000 9.96e-46 7y62-a1-m1-cB_7y62-a1-m1-cA
2 7y62-a1-m1-cA 74 74 1.0000 0.9324 0.9324 3.32e-43 7y62-a1-m1-cB_7y62-a1-m1-cA
3 7d8s-a2-m1-cD 175 68 0.6957 0.2743 0.7059 1.45e-29 7d8s-a2-m1-cD_7d8s-a2-m1-cC
4 7f09-a2-m1-cC 67 67 0.7101 0.7313 0.7313 1.25e-28 7f09-a2-m1-cD_7f09-a2-m1-cC
5 7d8s-a2-m1-cC 184 68 0.6957 0.2609 0.7059 1.02e-27 7d8s-a2-m1-cD_7d8s-a2-m1-cC
6 7d8t-a1-m1-cB 199 73 0.6957 0.2412 0.6575 3.20e-27 7d8t-a1-m1-cA_7d8t-a1-m1-cB
7 7d8t-a1-m1-cA 199 73 0.6957 0.2412 0.6575 3.20e-27 7d8t-a1-m1-cA_7d8t-a1-m1-cB
8 7f09-a2-m1-cD 65 67 0.6812 0.7231 0.7015 5.28e-27 7f09-a2-m1-cD_7f09-a2-m1-cC
9 7d8r-a2-m1-cD 174 68 0.6667 0.2644 0.6765 2.72e-26 7d8r-a2-m1-cC_7d8r-a2-m1-cD
10 7eod-a2-m1-cC 66 69 0.6812 0.7121 0.6812 1.20e-25 7eod-a2-m1-cC_7eod-a2-m1-cD
11 6fx5-a1-m1-cB 74 72 0.6667 0.6216 0.6389 2.71e-25 6fx5-a1-m1-cA_6fx5-a1-m1-cB
12 7eod-a2-m1-cD 69 72 0.6812 0.6812 0.6528 1.27e-24 7eod-a2-m1-cC_7eod-a2-m1-cD
13 7d8r-a2-m1-cC 168 66 0.6377 0.2619 0.6667 5.26e-24 7d8r-a2-m1-cC_7d8r-a2-m1-cD
14 6fx5-a1-m1-cA 72 69 0.6232 0.5972 0.6232 1.17e-22 6fx5-a1-m1-cA_6fx5-a1-m1-cB
15 1am9-a1-m1-cD 76 44 0.2754 0.2500 0.4318 1.38e-04 1am9-a1-m1-cD_1am9-a1-m1-cC
16 1am9-a1-m1-cC 82 44 0.2754 0.2317 0.4318 1.67e-04 1am9-a1-m1-cD_1am9-a1-m1-cC
17 1ukl-a2-m1-cF 58 45 0.2319 0.2759 0.3556 0.018 1ukl-a2-m1-cE_1ukl-a2-m1-cF
18 1ukl-a2-m1-cE 58 45 0.2319 0.2759 0.3556 0.018 1ukl-a2-m1-cE_1ukl-a2-m1-cF
19 7f2f-a1-m1-cB 94 51 0.2464 0.1809 0.3333 0.090 7f2f-a1-m1-cA_7f2f-a1-m1-cB
20 7ssa-a1-m1-cL 67 38 0.1884 0.1940 0.3421 0.13 7ssa-a1-m1-cK_7ssa-a1-m1-cL
21 7ssa-a1-m1-cK 67 38 0.1884 0.1940 0.3421 0.13 7ssa-a1-m1-cK_7ssa-a1-m1-cL
22 7f2f-a1-m1-cA 90 50 0.2464 0.1889 0.3400 0.16 7f2f-a1-m1-cA_7f2f-a1-m1-cB
23 7wuo-a1-m1-cC 201 50 0.2464 0.0846 0.3400 0.61 7wuo-a1-m1-cA_7wuo-a1-m1-cC, 7wuo-a1-m1-cB_7wuo-a1-m1-cC
24 7wuo-a1-m1-cB 201 50 0.2464 0.0846 0.3400 0.61 7wuo-a1-m1-cB_7wuo-a1-m1-cC
25 7wuo-a1-m1-cA 201 50 0.2464 0.0846 0.3400 0.61 7wuo-a1-m1-cA_7wuo-a1-m1-cC
26 4ydh-a1-m1-cC 328 38 0.2319 0.0488 0.4211 2.0 4ydh-a1-m1-cC_4ydh-a1-m1-cA
27 4ydh-a1-m1-cA 330 38 0.2319 0.0485 0.4211 2.0 4ydh-a1-m1-cC_4ydh-a1-m1-cA
28 7ueh-a4-m1-cF 386 51 0.2174 0.0389 0.2941 8.5 7ueh-a4-m1-cF_7ueh-a4-m1-cH

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Reference:
Jacob Schwartz et al.

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