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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=96)
RGVNKVILVGNLGQDPEVRYMAVANITLATSESEQTEWHRVVLFGKLAEVASEYLRKGSQ
VYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQML

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1kaw-a1-m1-cD 96 96 1.0000 1.0000 1.0000 6.02e-67 1kaw-a1-m1-cC_1kaw-a1-m1-cD
2 1kaw-a1-m1-cC 96 96 1.0000 1.0000 1.0000 6.02e-67 1kaw-a1-m1-cA_1kaw-a1-m1-cC, 1kaw-a1-m1-cC_1kaw-a1-m1-cD
3 1kaw-a1-m1-cA 96 96 1.0000 1.0000 1.0000 6.02e-67 1kaw-a1-m1-cA_1kaw-a1-m1-cC
4 4mz9-a1-m1-cD 114 110 1.0000 0.8421 0.8727 5.78e-61 4mz9-a1-m1-cB_4mz9-a1-m1-cD, 4mz9-a1-m1-cC_4mz9-a1-m1-cD
5 4mz9-a1-m1-cC 114 110 1.0000 0.8421 0.8727 5.78e-61 4mz9-a1-m1-cB_4mz9-a1-m1-cC, 4mz9-a1-m1-cC_4mz9-a1-m1-cD
6 4mz9-a1-m1-cB 114 110 1.0000 0.8421 0.8727 5.78e-61 4mz9-a1-m1-cB_4mz9-a1-m1-cC, 4mz9-a1-m1-cB_4mz9-a1-m1-cD
7 1sru-a1-m1-cD 101 101 0.9792 0.9307 0.9307 6.05e-59 1sru-a1-m1-cA_1sru-a1-m1-cD
8 1sru-a1-m1-cC 96 97 0.9688 0.9688 0.9588 1.00e-58 1sru-a1-m1-cC_1sru-a1-m1-cA
9 1sru-a1-m1-cA 100 101 0.9688 0.9300 0.9208 4.93e-58 1sru-a1-m1-cA_1sru-a1-m1-cD, 1sru-a1-m1-cC_1sru-a1-m1-cA
10 7f25-a1-m1-cB 106 104 0.9062 0.8208 0.8365 5.79e-55 7f25-a1-m1-cA_7f25-a1-m1-cB
11 7f25-a1-m1-cA 106 104 0.9062 0.8208 0.8365 5.79e-55 7f25-a1-m1-cA_7f25-a1-m1-cB
12 3tqy-a1-m1-cD 96 92 0.6667 0.6667 0.6957 4.62e-45 3tqy-a1-m1-cD_3tqy-a1-m1-cC
13 3tqy-a1-m1-cC 106 102 0.6667 0.6038 0.6275 1.93e-41 3tqy-a1-m1-cD_3tqy-a1-m1-cC
14 5odn-a1-m1-cD 106 89 0.5625 0.5094 0.6067 9.70e-36 5odn-a1-m1-cA_5odn-a1-m1-cD
15 3pgz-a1-m1-cA 109 105 0.6146 0.5413 0.5619 1.95e-34 3pgz-a1-m1-cA_3pgz-a1-m1-cB
16 5odn-a1-m1-cC 102 90 0.5729 0.5392 0.6111 5.08e-34 5odn-a1-m1-cC_5odn-a1-m1-cF
17 5odn-a1-m1-cH 99 89 0.5625 0.5455 0.6067 7.37e-34 5odn-a1-m1-cA_5odn-a1-m1-cH
18 5odn-a1-m1-cA 99 89 0.5625 0.5455 0.6067 7.37e-34 5odn-a1-m1-cA_5odn-a1-m1-cD, 5odn-a1-m1-cA_5odn-a1-m1-cH
19 3pgz-a1-m1-cB 114 110 0.6146 0.5175 0.5364 1.06e-33 3pgz-a1-m1-cA_3pgz-a1-m1-cB
20 5odn-a1-m1-cF 105 94 0.5625 0.5143 0.5745 2.57e-33 5odn-a1-m1-cC_5odn-a1-m1-cF
21 5odn-a1-m1-cE 105 98 0.5625 0.5143 0.5510 1.42e-30 5odn-a1-m1-cG_5odn-a1-m1-cE
22 5odn-a1-m1-cG 102 98 0.5625 0.5294 0.5510 2.49e-30 5odn-a1-m1-cG_5odn-a1-m1-cE
23 5odp-a1-m1-cA 99 92 0.5000 0.4848 0.5217 7.58e-27 5odp-a1-m1-cA_5odp-a1-m1-cG
24 5odp-a1-m1-cG 100 82 0.4688 0.4500 0.5488 3.00e-25 5odp-a1-m1-cA_5odp-a1-m1-cG
25 3lgj-a1-m1-cB 97 90 0.4896 0.4845 0.5222 1.86e-23 3lgj-a1-m1-cA_3lgj-a1-m1-cB
26 3lgj-a1-m1-cA 95 90 0.4688 0.4737 0.5000 1.55e-21 3lgj-a1-m1-cA_3lgj-a1-m1-cB
27 3ulp-a1-m1-cC 116 102 0.3438 0.2845 0.3235 9.36e-18 3ulp-a1-m1-cD_3ulp-a1-m1-cC
28 1z9f-a2-m4-cA 89 86 0.3750 0.4045 0.4186 5.64e-17 1z9f-a2-m1-cA_1z9f-a2-m4-cA, 1z9f-a2-m3-cA_1z9f-a2-m4-cA
29 1z9f-a2-m3-cA 89 86 0.3750 0.4045 0.4186 5.64e-17 1z9f-a2-m3-cA_1z9f-a2-m4-cA
30 1z9f-a2-m1-cA 89 86 0.3750 0.4045 0.4186 5.64e-17 1z9f-a2-m1-cA_1z9f-a2-m4-cA
31 3ulp-a1-m1-cD 113 100 0.3542 0.3009 0.3400 9.17e-17 3ulp-a1-m1-cD_3ulp-a1-m1-cA, 3ulp-a1-m1-cD_3ulp-a1-m1-cB, 3ulp-a1-m1-cD_3ulp-a1-m1-cC
32 3ulp-a1-m1-cA 114 102 0.3438 0.2895 0.3235 1.48e-16 3ulp-a1-m1-cD_3ulp-a1-m1-cA
33 2dud-a2-m2-cB 92 89 0.3438 0.3587 0.3708 2.54e-16 2dud-a2-m2-cB_2dud-a2-m1-cA, 2dud-a2-m2-cB_2dud-a2-m2-cA
34 3ulp-a1-m1-cB 114 101 0.3438 0.2895 0.3267 3.31e-16 3ulp-a1-m1-cD_3ulp-a1-m1-cB
35 6bhw-a2-m1-cF 96 87 0.3542 0.3542 0.3908 1.79e-15 6bhw-a2-m1-cF_6bhw-a2-m1-cE
36 2dud-a2-m2-cA 95 92 0.3542 0.3579 0.3696 6.78e-15 2dud-a2-m2-cB_2dud-a2-m2-cA
37 2dud-a2-m1-cA 95 92 0.3542 0.3579 0.3696 6.78e-15 2dud-a2-m2-cB_2dud-a2-m1-cA
38 2vw9-a1-m2-cB 105 89 0.3854 0.3524 0.4157 2.35e-14 2vw9-a1-m1-cB_2vw9-a1-m2-cB
39 2vw9-a1-m1-cB 105 89 0.3854 0.3524 0.4157 2.35e-14 2vw9-a1-m1-cB_2vw9-a1-m2-cB
40 6bhx-a1-m1-cC 102 88 0.3542 0.3333 0.3864 6.13e-14 6bhx-a1-m1-cA_6bhx-a1-m1-cC
41 6bhw-a2-m1-cE 99 89 0.3542 0.3434 0.3820 8.24e-14 6bhw-a2-m1-cE_6bhw-a2-m1-cG, 6bhw-a2-m1-cF_6bhw-a2-m1-cE
42 6bhw-a2-m1-cG 101 91 0.3542 0.3366 0.3736 1.73e-13 6bhw-a2-m1-cE_6bhw-a2-m1-cG
43 7d8j-a1-m2-cA 112 97 0.3542 0.3036 0.3505 3.49e-13 7d8j-a1-m1-cA_7d8j-a1-m2-cA, 7d8j-a1-m2-cB_7d8j-a1-m2-cA
44 7d8j-a1-m1-cA 112 97 0.3542 0.3036 0.3505 3.49e-13 7d8j-a1-m1-cA_7d8j-a1-m2-cA, 7d8j-a1-m2-cB_7d8j-a1-m1-cA
45 5xgt-a1-m1-cA 104 97 0.3333 0.3077 0.3299 6.40e-12 5xgt-a1-m1-cA_5xgt-a1-m1-cB
46 5xgt-a1-m1-cB 105 97 0.3333 0.3048 0.3299 7.14e-12 5xgt-a1-m1-cA_5xgt-a1-m1-cB
47 2fxq-a1-m2-cA 197 89 0.3958 0.1929 0.4270 8.06e-12 2fxq-a1-m1-cA_2fxq-a1-m2-cA
48 2fxq-a1-m2-cA 197 83 0.3229 0.1574 0.3735 3.53e-09 2fxq-a1-m1-cA_2fxq-a1-m2-cA
49 2fxq-a1-m1-cA 197 89 0.3958 0.1929 0.4270 8.06e-12 2fxq-a1-m1-cA_2fxq-a1-m2-cA
50 2fxq-a1-m1-cA 197 83 0.3229 0.1574 0.3735 3.53e-09 2fxq-a1-m1-cA_2fxq-a1-m2-cA
51 2ihf-a1-m2-cA 205 98 0.3542 0.1659 0.3469 6.22e-11 2ihf-a1-m1-cA_2ihf-a1-m2-cA
52 2ihf-a1-m2-cA 205 71 0.3229 0.1512 0.4366 1.52e-06 2ihf-a1-m1-cA_2ihf-a1-m2-cA
53 2ihf-a1-m1-cA 205 98 0.3542 0.1659 0.3469 6.22e-11 2ihf-a1-m1-cA_2ihf-a1-m2-cA
54 2ihf-a1-m1-cA 205 71 0.3229 0.1512 0.4366 1.52e-06 2ihf-a1-m1-cA_2ihf-a1-m2-cA
55 6bhx-a1-m1-cA 98 88 0.3438 0.3367 0.3750 6.50e-11 6bhx-a1-m1-cA_6bhx-a1-m1-cC
56 3udg-a2-m1-cC 214 95 0.3854 0.1729 0.3895 3.04e-10 3udg-a2-m1-cB_3udg-a2-m1-cC
57 3udg-a2-m1-cC 214 76 0.2812 0.1262 0.3553 6.60e-05 3udg-a2-m1-cB_3udg-a2-m1-cC
58 3udg-a2-m1-cB 214 92 0.3646 0.1636 0.3804 1.08e-09 3udg-a2-m1-cB_3udg-a2-m1-cC
59 3udg-a2-m1-cB 214 84 0.3021 0.1355 0.3452 3.90e-05 3udg-a2-m1-cB_3udg-a2-m1-cC
60 7d8j-a1-m2-cB 98 97 0.3333 0.3265 0.3299 2.03e-09 7d8j-a1-m2-cB_7d8j-a1-m1-cA, 7d8j-a1-m2-cB_7d8j-a1-m2-cA
61 1x3e-a1-m2-cB 119 109 0.3542 0.2857 0.3119 2.60e-09 1x3e-a1-m2-cA_1x3e-a1-m2-cB
62 7f5z-a1-m2-cA 117 107 0.3750 0.3077 0.3364 3.80e-09 7f5z-a1-m2-cA_7f5z-a1-m2-cB
63 7f5y-a1-m2-cB 120 109 0.3438 0.2750 0.3028 5.84e-09 7f5y-a1-m2-cA_7f5y-a1-m2-cB
64 7f5z-a1-m2-cB 118 107 0.3438 0.2797 0.3084 5.93e-09 7f5z-a1-m1-cB_7f5z-a1-m2-cB, 7f5z-a1-m2-cA_7f5z-a1-m2-cB
65 7f5z-a1-m1-cB 118 107 0.3438 0.2797 0.3084 5.93e-09 7f5z-a1-m1-cB_7f5z-a1-m2-cB
66 3vdy-a1-m1-cA 101 96 0.3438 0.3267 0.3438 7.95e-09 3vdy-a1-m2-cB_3vdy-a1-m1-cA
67 3a5u-a1-m2-cA 118 109 0.3646 0.2966 0.3211 1.10e-08 3a5u-a1-m1-cA_3a5u-a1-m2-cA, 3a5u-a1-m2-cB_3a5u-a1-m2-cA
68 3a5u-a1-m1-cA 118 109 0.3646 0.2966 0.3211 1.10e-08 3a5u-a1-m1-cA_3a5u-a1-m2-cA
69 3vdy-a1-m2-cB 97 96 0.3438 0.3402 0.3438 1.49e-08 3vdy-a1-m1-cB_3vdy-a1-m2-cB, 3vdy-a1-m2-cB_3vdy-a1-m1-cA
70 3vdy-a1-m1-cB 97 96 0.3438 0.3402 0.3438 1.49e-08 3vdy-a1-m1-cB_3vdy-a1-m2-cB
71 7f5y-a1-m2-cA 109 100 0.3333 0.2936 0.3200 1.63e-08 7f5y-a1-m2-cA_7f5y-a1-m2-cB
72 1se8-a1-m2-cA 205 79 0.3125 0.1463 0.3797 8.06e-08 1se8-a1-m1-cA_1se8-a1-m2-cA
73 1se8-a1-m2-cA 205 88 0.3021 0.1415 0.3295 2.07e-04 1se8-a1-m1-cA_1se8-a1-m2-cA
74 1se8-a1-m1-cA 205 79 0.3125 0.1463 0.3797 8.06e-08 1se8-a1-m1-cA_1se8-a1-m2-cA
75 1se8-a1-m1-cA 205 88 0.3021 0.1415 0.3295 2.07e-04 1se8-a1-m1-cA_1se8-a1-m2-cA
76 1x3e-a1-m2-cA 110 105 0.3438 0.3000 0.3143 1.84e-07 1x3e-a1-m1-cA_1x3e-a1-m2-cA, 1x3e-a1-m2-cA_1x3e-a1-m2-cB
77 1x3e-a1-m1-cA 110 105 0.3438 0.3000 0.3143 1.84e-07 1x3e-a1-m1-cA_1x3e-a1-m2-cA
78 1ue7-a2-m3-cD 95 74 0.2708 0.2737 0.3514 1.86e-07 1ue7-a2-m1-cD_1ue7-a2-m3-cD
79 1ue7-a2-m1-cD 95 74 0.2708 0.2737 0.3514 1.86e-07 1ue7-a2-m1-cD_1ue7-a2-m3-cD
80 1ue7-a1-m2-cB 98 73 0.2708 0.2653 0.3562 2.04e-07 1ue7-a1-m2-cB_1ue7-a1-m1-cA, 1ue7-a1-m2-cB_1ue7-a1-m2-cA
81 3a5u-a1-m2-cB 112 105 0.3542 0.3036 0.3238 3.74e-07 3a5u-a1-m2-cB_3a5u-a1-m2-cA
82 3eiv-a2-m1-cB 111 96 0.3021 0.2613 0.3021 1.17e-06 3eiv-a2-m1-cA_3eiv-a2-m1-cB
83 1ue1-a1-m2-cB 119 86 0.2812 0.2269 0.3140 1.92e-06 1ue1-a1-m1-cB_1ue1-a1-m2-cB
84 1ue1-a1-m1-cB 119 86 0.2812 0.2269 0.3140 1.92e-06 1ue1-a1-m1-cB_1ue1-a1-m2-cB
85 1ue7-a1-m2-cA 106 78 0.2604 0.2358 0.3205 7.90e-06 1ue7-a1-m2-cB_1ue7-a1-m2-cA
86 1ue7-a1-m1-cA 106 78 0.2604 0.2358 0.3205 7.90e-06 1ue7-a1-m2-cB_1ue7-a1-m1-cA
87 3eiv-a2-m1-cA 98 72 0.2292 0.2245 0.3056 2.26e-05 3eiv-a2-m1-cA_3eiv-a2-m1-cB
88 3eiv-a1-m1-cA 98 72 0.2292 0.2245 0.3056 2.26e-05 3eiv-a1-m1-cA_3eiv-a1-m1-cD
89 3eiv-a3-m1-cD 100 70 0.2188 0.2100 0.3000 7.88e-04 3eiv-a3-m1-cD_3eiv-a3-m1-cC
90 3eiv-a1-m1-cD 100 70 0.2188 0.2100 0.3000 7.88e-04 3eiv-a1-m1-cA_3eiv-a1-m1-cD
91 3eiv-a3-m1-cC 111 83 0.2500 0.2162 0.2892 0.002 3eiv-a3-m1-cD_3eiv-a3-m1-cC
92 6cqk-a1-m1-cD 87 36 0.1354 0.1494 0.3611 0.025 6cqk-a1-m1-cD_6cqk-a1-m1-cB
93 6cqk-a1-m1-cB 93 65 0.2083 0.2151 0.3077 0.029 6cqk-a1-m1-cD_6cqk-a1-m1-cB
94 6cqo-a1-m1-cG 87 59 0.1771 0.1954 0.2881 0.056 6cqo-a1-m1-cG_6cqo-a1-m1-cA
95 6cqo-a1-m1-cA 93 32 0.1250 0.1290 0.3750 0.20 6cqo-a1-m1-cG_6cqo-a1-m1-cA
96 4le5-a1-m1-cB 386 45 0.1354 0.0337 0.2889 2.6 4le5-a1-m1-cB_4le5-a1-m1-cA
97 4le5-a1-m1-cA 388 45 0.1354 0.0335 0.2889 2.6 4le5-a1-m1-cB_4le5-a1-m1-cA
98 5lvt-a2-m1-cD 91 66 0.1875 0.1978 0.2727 7.8 5lvt-a2-m1-cB_5lvt-a2-m1-cD
99 5lvt-a2-m1-cB 91 66 0.1875 0.1978 0.2727 7.8 5lvt-a2-m1-cB_5lvt-a2-m1-cD
100 3pr6-a2-m2-cA 143 24 0.0938 0.0629 0.3750 8.4 3pr6-a2-m1-cA_3pr6-a2-m2-cA
101 3pr6-a2-m1-cA 143 24 0.0938 0.0629 0.3750 8.4 3pr6-a2-m1-cA_3pr6-a2-m2-cA

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Reference:
Jacob Schwartz et al.

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