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HomodimerDB
>protein (length=60)
RKCNKLVPLFYKTCPAGKNLCYKMFMVSNLTVPVKRGCIDVCPKNSALVKYVCCNTDRCN

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4om5-a1-m1-cC 60 60 1.0000 1.0000 1.0000 2.95e-38 4om5-a1-m1-cA_4om5-a1-m1-cC
2 4om5-a1-m1-cB 60 60 1.0000 1.0000 1.0000 2.95e-38 4om5-a1-m1-cA_4om5-a1-m1-cB
3 4om5-a1-m1-cA 60 60 1.0000 1.0000 1.0000 2.95e-38 4om5-a1-m1-cA_4om5-a1-m1-cB, 4om5-a1-m1-cA_4om5-a1-m1-cC
4 4om4-a1-m1-cE 60 59 0.9833 0.9833 1.0000 1.97e-37 4om4-a1-m1-cA_4om4-a1-m1-cE, 4om4-a1-m1-cC_4om4-a1-m1-cE, 4om4-a1-m1-cD_4om4-a1-m1-cE
5 4om4-a1-m1-cD 60 59 0.9833 0.9833 1.0000 1.97e-37 4om4-a1-m1-cD_4om4-a1-m1-cE
6 4om4-a1-m1-cC 60 59 0.9833 0.9833 1.0000 1.97e-37 4om4-a1-m1-cA_4om4-a1-m1-cC, 4om4-a1-m1-cC_4om4-a1-m1-cE
7 4om4-a1-m1-cB 60 59 0.9833 0.9833 1.0000 1.97e-37 4om4-a1-m1-cA_4om4-a1-m1-cB
8 4om4-a1-m1-cA 60 59 0.9833 0.9833 1.0000 1.97e-37 4om4-a1-m1-cA_4om4-a1-m1-cB, 4om4-a1-m1-cA_4om4-a1-m1-cC, 4om4-a1-m1-cA_4om4-a1-m1-cE
9 1xt3-a1-m2-cB 60 59 0.8833 0.8833 0.8983 5.52e-33 1xt3-a1-m1-cA_1xt3-a1-m2-cB
10 1xt3-a1-m1-cA 60 59 0.8833 0.8833 0.8983 5.52e-33 1xt3-a1-m1-cA_1xt3-a1-m2-cB
11 1cdt-a1-m1-cB 60 59 0.7833 0.7833 0.7966 1.57e-29 1cdt-a1-m1-cA_1cdt-a1-m1-cB
12 1cdt-a1-m1-cA 60 59 0.7833 0.7833 0.7966 1.57e-29 1cdt-a1-m1-cA_1cdt-a1-m1-cB
13 1tgx-a4-m15-cC 60 59 0.7167 0.7167 0.7288 4.74e-27 1tgx-a4-m14-cB_1tgx-a4-m15-cC
14 1tgx-a4-m14-cB 60 59 0.7167 0.7167 0.7288 4.74e-27 1tgx-a4-m14-cB_1tgx-a4-m15-cC
15 1tgx-a3-m9-cA 60 59 0.7167 0.7167 0.7288 4.74e-27 1tgx-a3-m10-cB_1tgx-a3-m9-cA
16 1tgx-a3-m10-cB 60 59 0.7167 0.7167 0.7288 4.74e-27 1tgx-a3-m10-cB_1tgx-a3-m9-cA
17 1tgx-a1-m4-cC 60 59 0.7167 0.7167 0.7288 4.74e-27 1tgx-a1-m4-cA_1tgx-a1-m4-cC
18 1tgx-a1-m4-cA 60 59 0.7167 0.7167 0.7288 4.74e-27 1tgx-a1-m4-cA_1tgx-a1-m4-cC
19 3vts-a1-m1-cB 61 57 0.6167 0.6066 0.6491 5.83e-22 3vts-a1-m1-cA_3vts-a1-m1-cB
20 3vts-a1-m1-cA 61 57 0.6167 0.6066 0.6491 5.83e-22 3vts-a1-m1-cA_3vts-a1-m1-cB
21 1kxi-a1-m1-cB 62 58 0.6167 0.5968 0.6379 7.74e-20 1kxi-a1-m1-cA_1kxi-a1-m1-cB
22 1kxi-a1-m1-cA 62 58 0.6167 0.5968 0.6379 7.74e-20 1kxi-a1-m1-cA_1kxi-a1-m1-cB
23 4lft-a1-m1-cA 64 64 0.4333 0.4062 0.4062 2.16e-07 4lft-a1-m1-cA_4lft-a1-m1-cB
24 4lft-a1-m1-cB 72 64 0.4333 0.3611 0.4062 2.90e-07 4lft-a1-m1-cA_4lft-a1-m1-cB
25 4zqy-a2-m1-cC 65 50 0.3667 0.3385 0.4400 1.40e-06 4zqy-a2-m1-cB_4zqy-a2-m1-cC
26 4zqy-a2-m1-cB 65 50 0.3667 0.3385 0.4400 1.40e-06 4zqy-a2-m1-cB_4zqy-a2-m1-cC
27 2abx-a1-m1-cB 74 59 0.3833 0.3108 0.3898 3.32e-06 2abx-a1-m1-cA_2abx-a1-m1-cB
28 2abx-a1-m1-cA 74 59 0.3833 0.3108 0.3898 3.32e-06 2abx-a1-m1-cA_2abx-a1-m1-cB
29 3neq-a3-m2-cA 66 61 0.3667 0.3333 0.3607 6.23e-06 3neq-a3-m1-cB_3neq-a3-m2-cA
30 3neq-a3-m1-cB 66 61 0.3667 0.3333 0.3607 6.23e-06 3neq-a3-m1-cB_3neq-a3-m2-cA
31 3hh7-a1-m1-cB 65 58 0.3167 0.2923 0.3276 3.77e-05 3hh7-a1-m1-cA_3hh7-a1-m1-cB
32 3hh7-a1-m1-cA 65 58 0.3167 0.2923 0.3276 3.77e-05 3hh7-a1-m1-cA_3hh7-a1-m1-cB
33 1ff4-a2-m3-cA 65 50 0.3167 0.2923 0.3800 5.64e-05 1ff4-a2-m1-cA_1ff4-a2-m3-cA
34 1ff4-a2-m1-cA 65 50 0.3167 0.2923 0.3800 5.64e-05 1ff4-a2-m1-cA_1ff4-a2-m3-cA
35 1ff4-a1-m2-cA 65 50 0.3167 0.2923 0.3800 5.64e-05 1ff4-a1-m1-cA_1ff4-a1-m2-cA
36 1ff4-a1-m1-cA 65 50 0.3167 0.2923 0.3800 5.64e-05 1ff4-a1-m1-cA_1ff4-a1-m2-cA
37 7c28-a1-m1-cB 59 55 0.3500 0.3559 0.3818 6.41e-05 7c28-a1-m1-cB_7c28-a1-m1-cA
38 7c28-a1-m1-cA 65 53 0.3333 0.3077 0.3774 7.73e-05 7c28-a1-m1-cB_7c28-a1-m1-cA
39 4do8-a3-m2-cB 66 51 0.3000 0.2727 0.3529 2.06e-04 4do8-a3-m1-cA_4do8-a3-m2-cB, 4do8-a3-m1-cB_4do8-a3-m2-cB, 4do8-a3-m2-cA_4do8-a3-m2-cB
40 4do8-a3-m2-cA 66 51 0.3000 0.2727 0.3529 2.06e-04 4do8-a3-m2-cA_4do8-a3-m2-cB
41 4do8-a3-m1-cB 66 51 0.3000 0.2727 0.3529 2.06e-04 4do8-a3-m1-cB_4do8-a3-m2-cB
42 4do8-a3-m1-cA 66 51 0.3000 0.2727 0.3529 2.06e-04 4do8-a3-m1-cA_4do8-a3-m2-cB
43 1v6p-a1-m1-cB 62 47 0.2833 0.2742 0.3617 0.004 1v6p-a1-m1-cA_1v6p-a1-m1-cB
44 1v6p-a1-m1-cA 62 47 0.2833 0.2742 0.3617 0.004 1v6p-a1-m1-cA_1v6p-a1-m1-cB
45 5xwe-a1-m1-cB 50 48 0.2833 0.3400 0.3542 0.005 5xwe-a1-m1-cB_5xwe-a1-m1-cA
46 5xwe-a1-m1-cA 51 48 0.2833 0.3333 0.3542 0.005 5xwe-a1-m1-cB_5xwe-a1-m1-cA
47 1qkd-a1-m1-cB 62 53 0.2833 0.2742 0.3208 0.022 1qkd-a1-m1-cA_1qkd-a1-m1-cB
48 1qkd-a1-m1-cA 62 53 0.2833 0.2742 0.3208 0.022 1qkd-a1-m1-cA_1qkd-a1-m1-cB
49 6zfm-a1-m1-cE 65 59 0.3500 0.3231 0.3559 0.065 6zfm-a1-m1-cE_6zfm-a1-m1-cA
50 6zfm-a1-m1-cD 71 56 0.3333 0.2817 0.3571 0.66 6zfm-a1-m1-cA_6zfm-a1-m1-cD
51 6zfm-a1-m1-cA 71 56 0.3333 0.2817 0.3571 0.66 6zfm-a1-m1-cA_6zfm-a1-m1-cD, 6zfm-a1-m1-cE_6zfm-a1-m1-cA
52 2ctx-a1-m2-cA 71 56 0.3333 0.2817 0.3571 0.66 2ctx-a1-m1-cA_2ctx-a1-m2-cA
53 2ctx-a1-m1-cA 71 56 0.3333 0.2817 0.3571 0.66 2ctx-a1-m1-cA_2ctx-a1-m2-cA
54 4aea-a2-m2-cB 67 56 0.3333 0.2985 0.3571 0.67 4aea-a2-m1-cB_4aea-a2-m2-cB
55 4aea-a2-m1-cB 67 56 0.3333 0.2985 0.3571 0.67 4aea-a2-m1-cB_4aea-a2-m2-cB

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Reference:
Jacob Schwartz et al.

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