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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=35)
RKLSDELLIESYFKATENLNRDFIELIENEIKRRS

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3fyr-a2-m1-cA 36 35 1.0000 0.9722 1.0000 4.19e-18 3fyr-a2-m2-cB_3fyr-a2-m1-cA
2 3fyr-a2-m2-cB 35 35 1.0000 1.0000 1.0000 4.26e-18 3fyr-a2-m2-cB_3fyr-a2-m1-cA
3 2gwh-a1-m1-cA 285 26 0.3429 0.0421 0.4615 0.12 2gwh-a1-m1-cA_2gwh-a1-m1-cB
4 2gwh-a1-m1-cB 288 26 0.3429 0.0417 0.4615 0.12 2gwh-a1-m1-cA_2gwh-a1-m1-cB
5 4foi-a1-m1-cB 899 22 0.2857 0.0111 0.4545 2.5 4foi-a1-m1-cA_4foi-a1-m1-cB
6 4foi-a1-m1-cA 899 22 0.2857 0.0111 0.4545 2.5 4foi-a1-m1-cA_4foi-a1-m1-cB
7 7uj6-a2-m1-cD 156 24 0.2857 0.0641 0.4167 3.8 7uj6-a2-m1-cD_7uj6-a2-m1-cC
8 7uj6-a2-m1-cC 157 24 0.2857 0.0637 0.4167 3.9 7uj6-a2-m1-cD_7uj6-a2-m1-cC
9 1t72-a4-m1-cF 204 26 0.3714 0.0637 0.5000 7.1 1t72-a4-m1-cF_1t72-a4-m1-cD, 1t72-a4-m1-cG_1t72-a4-m1-cF
10 5x4t-a1-m2-cA 350 35 0.3429 0.0343 0.3429 7.3 5x4t-a1-m1-cA_5x4t-a1-m2-cA
11 5x4t-a1-m1-cA 350 35 0.3429 0.0343 0.3429 7.3 5x4t-a1-m1-cA_5x4t-a1-m2-cA
12 1t72-a4-m1-cG 201 26 0.3714 0.0647 0.5000 7.4 1t72-a4-m1-cG_1t72-a4-m1-cF, 1t72-a4-m1-cG_1t72-a4-m2-cA
13 1t72-a4-m2-cA 205 26 0.3714 0.0634 0.5000 8.3 1t72-a4-m1-cG_1t72-a4-m2-cA
14 1t72-a4-m1-cD 205 26 0.3714 0.0634 0.5000 8.3 1t72-a4-m1-cF_1t72-a4-m1-cD

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Reference:
Jacob Schwartz et al.

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