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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=23)
RKQEDKEELSKYHENEARKKLGE

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3f87-a2-m3-cD 23 23 1.0000 1.0000 1.0000 2.58e-09 3f87-a2-m3-cC_3f87-a2-m3-cD
2 3f87-a2-m3-cC 23 23 1.0000 1.0000 1.0000 2.58e-09 3f87-a2-m3-cC_3f87-a2-m3-cD
3 3hez-a1-m1-cC 25 20 0.6522 0.6000 0.7500 0.004 3hez-a1-m1-cB_3hez-a1-m1-cC
4 3hez-a1-m1-cB 25 20 0.6522 0.6000 0.7500 0.004 3hez-a1-m1-cA_3hez-a1-m1-cB, 3hez-a1-m1-cB_3hez-a1-m1-cC
5 3hez-a1-m1-cA 25 20 0.6522 0.6000 0.7500 0.004 3hez-a1-m1-cA_3hez-a1-m1-cB
6 3c3f-a1-m1-cD 23 18 0.5652 0.5652 0.7222 0.10 3c3f-a1-m1-cC_3c3f-a1-m1-cD
7 3c3f-a1-m1-cC 23 18 0.5652 0.5652 0.7222 0.10 3c3f-a1-m1-cC_3c3f-a1-m1-cD
8 3het-a2-m4-cA 20 17 0.4783 0.5500 0.6471 0.98 3het-a2-m2-cA_3het-a2-m4-cA
9 3het-a2-m2-cA 20 17 0.4783 0.5500 0.6471 0.98 3het-a2-m2-cA_3het-a2-m4-cA
10 3c3h-a1-m4-cA 22 17 0.4783 0.5000 0.6471 1.3 3c3h-a1-m2-cA_3c3h-a1-m4-cA
11 3c3h-a1-m2-cA 22 17 0.4783 0.5000 0.6471 1.3 3c3h-a1-m2-cA_3c3h-a1-m4-cA

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Reference:
Jacob Schwartz et al.

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