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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=23)
RMQIEKLEILSLYHENEARIKLL

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3c3f-a1-m1-cD 23 23 1.0000 1.0000 1.0000 1.51e-09 3c3f-a1-m1-cC_3c3f-a1-m1-cD
2 3c3f-a1-m1-cC 23 23 1.0000 1.0000 1.0000 1.51e-09 3c3f-a1-m1-cC_3c3f-a1-m1-cD
3 3hez-a1-m1-cC 25 23 0.7391 0.6800 0.7391 0.001 3hez-a1-m1-cB_3hez-a1-m1-cC
4 3hez-a1-m1-cB 25 23 0.7391 0.6800 0.7391 0.001 3hez-a1-m1-cA_3hez-a1-m1-cB, 3hez-a1-m1-cB_3hez-a1-m1-cC
5 3hez-a1-m1-cA 25 23 0.7391 0.6800 0.7391 0.001 3hez-a1-m1-cA_3hez-a1-m1-cB
6 2oxk-a1-m4-cA 24 23 0.7826 0.7500 0.7826 0.018 2oxk-a1-m2-cA_2oxk-a1-m4-cA
7 2oxk-a1-m2-cA 24 23 0.7826 0.7500 0.7826 0.018 2oxk-a1-m2-cA_2oxk-a1-m4-cA
8 3f87-a2-m3-cD 23 18 0.5652 0.5652 0.7222 0.10 3f87-a2-m3-cC_3f87-a2-m3-cD
9 3f87-a2-m3-cC 23 18 0.5652 0.5652 0.7222 0.10 3f87-a2-m3-cC_3f87-a2-m3-cD
10 7wvf-a1-m1-cB 659 17 0.4783 0.0167 0.6471 2.2 7wvf-a1-m1-cA_7wvf-a1-m1-cB
11 7wvf-a1-m1-cA 659 17 0.4783 0.0167 0.6471 2.2 7wvf-a1-m1-cA_7wvf-a1-m1-cB
12 6rwa-a1-m1-cE 2361 14 0.3043 0.0030 0.5000 4.6 6rwa-a1-m1-cC_6rwa-a1-m1-cE, 6rwa-a1-m1-cD_6rwa-a1-m1-cE
13 6rwa-a1-m1-cD 2361 14 0.3043 0.0030 0.5000 4.6 6rwa-a1-m1-cD_6rwa-a1-m1-cE
14 6rwa-a1-m1-cC 2361 14 0.3043 0.0030 0.5000 4.6 6rwa-a1-m1-cC_6rwa-a1-m1-cE
15 2oxj-a1-m1-cB 22 23 0.5217 0.5455 0.5217 5.3 2oxj-a1-m1-cB_2oxj-a1-m1-cA
16 2oxj-a1-m1-cA 24 23 0.5217 0.5000 0.5217 6.3 2oxj-a1-m1-cB_2oxj-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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