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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=58)
RPAFCLEPPYAGPGKARIIRYFYNAAAGAAQAFVYGGARAKRNNFASAADALAACAAA

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3ci7-a1-m1-cC 58 58 1.0000 1.0000 1.0000 6.74e-34 3ci7-a1-m1-cB_3ci7-a1-m1-cC, 3ci7-a1-m1-cD_3ci7-a1-m1-cC
2 3ci7-a1-m1-cA 58 58 1.0000 1.0000 1.0000 6.74e-34 3ci7-a1-m1-cD_3ci7-a1-m1-cA
3 3ci7-a1-m1-cD 57 57 0.9828 1.0000 1.0000 1.97e-33 3ci7-a1-m1-cB_3ci7-a1-m1-cD, 3ci7-a1-m1-cD_3ci7-a1-m1-cA, 3ci7-a1-m1-cD_3ci7-a1-m1-cC
4 3ci7-a1-m1-cB 56 56 0.9655 1.0000 1.0000 4.84e-33 3ci7-a1-m1-cB_3ci7-a1-m1-cC, 3ci7-a1-m1-cB_3ci7-a1-m1-cD
5 3aud-a4-m2-cB 56 56 0.9310 0.9643 0.9643 1.83e-32 3aud-a4-m1-cA_3aud-a4-m2-cB, 3aud-a4-m2-cA_3aud-a4-m2-cB
6 3aud-a4-m2-cA 56 56 0.9310 0.9643 0.9643 1.83e-32 3aud-a4-m2-cA_3aud-a4-m2-cB
7 3aud-a4-m1-cA 56 56 0.9310 0.9643 0.9643 1.83e-32 3aud-a4-m1-cA_3aud-a4-m2-cB
8 2zvx-a1-m1-cA 58 58 0.7931 0.7931 0.7931 7.44e-29 2zvx-a1-m1-cB_2zvx-a1-m1-cA
9 2zvx-a1-m1-cB 57 57 0.7759 0.7895 0.7895 1.50e-28 2zvx-a1-m1-cB_2zvx-a1-m1-cA
10 2r9p-a2-m3-cI 58 58 0.7241 0.7241 0.7241 1.58e-26 2r9p-a2-m1-cF_2r9p-a2-m3-cI
11 2r9p-a2-m1-cF 58 58 0.7241 0.7241 0.7241 1.58e-26 2r9p-a2-m1-cF_2r9p-a2-m3-cI
12 1bz5-a1-m2-cE 56 55 0.7069 0.7321 0.7455 2.58e-26 1bz5-a1-m2-cA_1bz5-a1-m2-cE
13 1bz5-a1-m2-cD 56 55 0.7069 0.7321 0.7455 2.58e-26 1bz5-a1-m1-cA_1bz5-a1-m2-cD
14 1bz5-a1-m2-cC 56 55 0.7069 0.7321 0.7455 2.58e-26 1bz5-a1-m1-cC_1bz5-a1-m2-cC
15 1bz5-a1-m2-cA 56 55 0.7069 0.7321 0.7455 2.58e-26 1bz5-a1-m2-cA_1bz5-a1-m2-cE
16 1bz5-a1-m1-cC 56 55 0.7069 0.7321 0.7455 2.58e-26 1bz5-a1-m1-cC_1bz5-a1-m2-cC
17 1bz5-a1-m1-cA 56 55 0.7069 0.7321 0.7455 2.58e-26 1bz5-a1-m1-cA_1bz5-a1-m2-cD
18 1b0c-a1-m2-cD 56 55 0.7069 0.7321 0.7455 2.58e-26 1b0c-a1-m1-cC_1b0c-a1-m2-cD
19 1b0c-a1-m2-cC 56 55 0.7069 0.7321 0.7455 2.58e-26 1b0c-a1-m1-cC_1b0c-a1-m2-cC
20 1b0c-a1-m1-cC 56 55 0.7069 0.7321 0.7455 2.58e-26 1b0c-a1-m1-cC_1b0c-a1-m2-cC, 1b0c-a1-m1-cC_1b0c-a1-m2-cD
21 3btk-a2-m4-cI 56 55 0.6897 0.7143 0.7273 6.10e-25 3btk-a2-m1-cI_3btk-a2-m4-cI
22 3btk-a2-m1-cI 56 55 0.6897 0.7143 0.7273 6.10e-25 3btk-a2-m1-cI_3btk-a2-m4-cI
23 3byb-a1-m1-cB 58 57 0.3448 0.3448 0.3509 8.66e-09 3byb-a1-m1-cA_3byb-a1-m1-cB, 3byb-a1-m1-cB_3byb-a1-m1-cC
24 3byb-a1-m1-cC 58 56 0.3276 0.3276 0.3393 2.25e-08 3byb-a1-m1-cA_3byb-a1-m1-cC, 3byb-a1-m1-cB_3byb-a1-m1-cC
25 3byb-a1-m1-cA 58 56 0.3276 0.3276 0.3393 2.25e-08 3byb-a1-m1-cA_3byb-a1-m1-cB, 3byb-a1-m1-cA_3byb-a1-m1-cC
26 1aap-a1-m1-cB 56 52 0.3103 0.3214 0.3462 5.55e-07 1aap-a1-m1-cA_1aap-a1-m1-cB
27 1aap-a1-m1-cA 56 52 0.3103 0.3214 0.3462 5.55e-07 1aap-a1-m1-cA_1aap-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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