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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=89)
RPIHPGEILAEELGFLDKSANQLAKHLAIPTNRVTAILNGARSITADTALRLAKFFGTTP
EFWLNLQDAYDIKALKKSGKKIEKEVTPY

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3trb-a2-m1-cA 89 89 1.0000 1.0000 1.0000 8.30e-62 3trb-a2-m1-cA_3trb-a2-m1-cB
2 3trb-a2-m1-cB 90 89 1.0000 0.9889 1.0000 9.45e-62 3trb-a2-m1-cA_3trb-a2-m1-cB
3 3trb-a1-m2-cB 90 89 1.0000 0.9889 1.0000 9.45e-62 3trb-a1-m1-cB_3trb-a1-m2-cB
4 3trb-a1-m1-cB 90 89 1.0000 0.9889 1.0000 9.45e-62 3trb-a1-m1-cB_3trb-a1-m2-cB
5 6lb3-a3-m1-cD 92 90 0.4494 0.4348 0.4444 7.63e-20 6lb3-a3-m1-cD_6lb3-a3-m1-cC
6 6lb3-a3-m1-cC 93 90 0.4494 0.4301 0.4444 9.33e-20 6lb3-a3-m1-cD_6lb3-a3-m1-cC
7 6f8h-a2-m1-cB 94 87 0.4831 0.4574 0.4943 7.46e-19 6f8h-a2-m3-cC_6f8h-a2-m1-cB
8 6f8h-a2-m3-cC 93 87 0.4831 0.4624 0.4943 8.46e-19 6f8h-a2-m3-cC_6f8h-a2-m1-cB
9 2eby-a1-m1-cB 98 85 0.4045 0.3673 0.4235 6.67e-16 2eby-a1-m1-cB_2eby-a1-m1-cA
10 2eby-a1-m1-cA 102 85 0.4045 0.3529 0.4235 7.36e-16 2eby-a1-m1-cB_2eby-a1-m1-cA
11 4mcx-a1-m1-cA 93 74 0.2921 0.2796 0.3514 1.52e-13 4mcx-a1-m1-cC_4mcx-a1-m1-cA
12 4mcx-a1-m1-cC 92 74 0.2921 0.2826 0.3514 1.58e-13 4mcx-a1-m1-cC_4mcx-a1-m1-cA
13 2ict-a2-m2-cA 89 75 0.2584 0.2584 0.3067 1.43e-05 2ict-a2-m1-cA_2ict-a2-m2-cA
14 2ict-a2-m1-cA 89 75 0.2584 0.2584 0.3067 1.43e-05 2ict-a2-m1-cA_2ict-a2-m2-cA
15 6irp-a1-m1-cB 133 50 0.1685 0.1128 0.3000 0.28 6irp-a1-m1-cA_6irp-a1-m1-cB
16 6irp-a1-m1-cA 133 50 0.1685 0.1128 0.3000 0.28 6irp-a1-m1-cA_6irp-a1-m1-cB
17 3tr4-a1-m1-cE 166 83 0.2360 0.1265 0.2530 0.88 3tr4-a1-m1-cB_3tr4-a1-m1-cE, 3tr4-a1-m1-cF_3tr4-a1-m1-cE
18 3tr4-a1-m1-cB 166 83 0.2360 0.1265 0.2530 0.88 3tr4-a1-m1-cB_3tr4-a1-m1-cE
19 3tr4-a1-m1-cF 165 83 0.2360 0.1273 0.2530 0.92 3tr4-a1-m1-cF_3tr4-a1-m1-cE
20 3wtb-a2-m1-cF 243 60 0.2247 0.0823 0.3333 3.1 3wtb-a2-m1-cD_3wtb-a2-m1-cF, 3wtb-a2-m1-cE_3wtb-a2-m1-cF
21 3wtb-a2-m1-cE 243 60 0.2247 0.0823 0.3333 3.1 3wtb-a2-m1-cD_3wtb-a2-m1-cE, 3wtb-a2-m1-cE_3wtb-a2-m1-cF
22 3wtb-a2-m1-cD 243 60 0.2247 0.0823 0.3333 3.1 3wtb-a2-m1-cD_3wtb-a2-m1-cE, 3wtb-a2-m1-cD_3wtb-a2-m1-cF
23 3m5p-a1-m2-cA 532 75 0.2809 0.0470 0.3333 4.0 3m5p-a1-m1-cA_3m5p-a1-m2-cA
24 3m5p-a1-m1-cA 532 75 0.2809 0.0470 0.3333 4.0 3m5p-a1-m1-cA_3m5p-a1-m2-cA
25 6u5b-a1-m1-cl 285 83 0.2584 0.0807 0.2771 4.0 6u5b-a1-m1-ck_6u5b-a1-m1-cl
26 6u5b-a1-m1-ck 285 83 0.2584 0.0807 0.2771 4.0 6u5b-a1-m1-ck_6u5b-a1-m1-cl
27 5u7s-a1-m2-cA 329 44 0.1685 0.0456 0.3409 5.1 5u7s-a1-m2-cB_5u7s-a1-m2-cA
28 5u7s-a1-m1-cA 329 44 0.1685 0.0456 0.3409 5.1 5u7s-a1-m2-cB_5u7s-a1-m1-cA
29 5u7s-a1-m2-cB 324 44 0.1685 0.0463 0.3409 5.2 5u7s-a1-m1-cB_5u7s-a1-m2-cB, 5u7s-a1-m2-cB_5u7s-a1-m1-cA, 5u7s-a1-m2-cB_5u7s-a1-m2-cA
30 5u7s-a1-m1-cB 324 44 0.1685 0.0463 0.3409 5.2 5u7s-a1-m1-cB_5u7s-a1-m2-cB
31 1cfr-a1-m4-cA 283 30 0.1236 0.0389 0.3667 5.6 1cfr-a1-m1-cA_1cfr-a1-m4-cA, 1cfr-a1-m2-cA_1cfr-a1-m4-cA, 1cfr-a1-m3-cA_1cfr-a1-m4-cA
32 1cfr-a1-m3-cA 283 30 0.1236 0.0389 0.3667 5.6 1cfr-a1-m3-cA_1cfr-a1-m4-cA
33 1cfr-a1-m2-cA 283 30 0.1236 0.0389 0.3667 5.6 1cfr-a1-m2-cA_1cfr-a1-m4-cA
34 1cfr-a1-m1-cA 283 30 0.1236 0.0389 0.3667 5.6 1cfr-a1-m1-cA_1cfr-a1-m4-cA
35 1dhn-a1-m8-cA 121 52 0.1573 0.1157 0.2692 6.2 1dhn-a1-m2-cA_1dhn-a1-m8-cA, 1dhn-a1-m6-cA_1dhn-a1-m8-cA
36 1dhn-a1-m6-cA 121 52 0.1573 0.1157 0.2692 6.2 1dhn-a1-m6-cA_1dhn-a1-m8-cA
37 1dhn-a1-m2-cA 121 52 0.1573 0.1157 0.2692 6.2 1dhn-a1-m2-cA_1dhn-a1-m8-cA
38 7u6u-a1-m1-cB 399 69 0.2135 0.0476 0.2754 6.7 7u6u-a1-m1-cB_7u6u-a1-m1-cA
39 5b4t-a1-m4-cA 260 32 0.1348 0.0462 0.3750 7.0 5b4t-a1-m1-cA_5b4t-a1-m4-cA, 5b4t-a1-m2-cA_5b4t-a1-m4-cA, 5b4t-a1-m3-cA_5b4t-a1-m4-cA
40 5b4t-a1-m3-cA 260 32 0.1348 0.0462 0.3750 7.0 5b4t-a1-m3-cA_5b4t-a1-m4-cA
41 5b4t-a1-m2-cA 260 32 0.1348 0.0462 0.3750 7.0 5b4t-a1-m2-cA_5b4t-a1-m4-cA
42 5b4t-a1-m1-cA 260 32 0.1348 0.0462 0.3750 7.0 5b4t-a1-m1-cA_5b4t-a1-m4-cA
43 2hk3-a1-m1-cB 331 33 0.1348 0.0363 0.3636 8.2 2hk3-a1-m1-cA_2hk3-a1-m1-cB
44 2hk3-a1-m1-cA 331 33 0.1348 0.0363 0.3636 8.2 2hk3-a1-m1-cA_2hk3-a1-m1-cB
45 3j40-a1-m9-cG 335 25 0.1236 0.0328 0.4400 9.4 3j40-a1-m10-cA_3j40-a1-m9-cG, 3j40-a1-m8-cG_3j40-a1-m9-cG
46 3j40-a1-m9-cC 335 25 0.1236 0.0328 0.4400 9.4 3j40-a1-m54-cB_3j40-a1-m9-cC, 3j40-a1-m54-cC_3j40-a1-m9-cC, 3j40-a1-m9-cB_3j40-a1-m9-cC
47 3j40-a1-m9-cB 335 25 0.1236 0.0328 0.4400 9.4 3j40-a1-m9-cB_3j40-a1-m9-cC
48 3j40-a1-m8-cG 335 25 0.1236 0.0328 0.4400 9.4 3j40-a1-m8-cG_3j40-a1-m9-cG
49 3j40-a1-m54-cC 335 25 0.1236 0.0328 0.4400 9.4 3j40-a1-m54-cC_3j40-a1-m9-cC
50 3j40-a1-m54-cB 335 25 0.1236 0.0328 0.4400 9.4 3j40-a1-m54-cB_3j40-a1-m9-cC
51 3j40-a1-m10-cA 335 25 0.1236 0.0328 0.4400 9.4 3j40-a1-m10-cA_3j40-a1-m9-cG

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Reference:
Jacob Schwartz et al.

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