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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=90)
RPIHPGEILAEELGFLDKSANQLAKHLAIPTNRVTAILNGARSITADTALRLAKFFGTTP
EFWLNLQDAYDIKALKKSGKKIEKEVTPYD

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3trb-a2-m1-cB 90 90 1.0000 1.0000 1.0000 1.24e-62 3trb-a2-m1-cA_3trb-a2-m1-cB
2 3trb-a1-m2-cB 90 90 1.0000 1.0000 1.0000 1.24e-62 3trb-a1-m1-cB_3trb-a1-m2-cB
3 3trb-a1-m1-cB 90 90 1.0000 1.0000 1.0000 1.24e-62 3trb-a1-m1-cB_3trb-a1-m2-cB
4 3trb-a2-m1-cA 89 89 0.9889 1.0000 1.0000 9.55e-62 3trb-a2-m1-cA_3trb-a2-m1-cB
5 6lb3-a3-m1-cD 92 90 0.4444 0.4348 0.4444 9.43e-20 6lb3-a3-m1-cD_6lb3-a3-m1-cC
6 6lb3-a3-m1-cC 93 90 0.4444 0.4301 0.4444 1.07e-19 6lb3-a3-m1-cD_6lb3-a3-m1-cC
7 6f8h-a2-m1-cB 94 87 0.4778 0.4574 0.4943 9.12e-19 6f8h-a2-m3-cC_6f8h-a2-m1-cB
8 6f8h-a2-m3-cC 93 87 0.4778 0.4624 0.4943 9.28e-19 6f8h-a2-m3-cC_6f8h-a2-m1-cB
9 2eby-a1-m1-cB 98 85 0.4000 0.3673 0.4235 8.88e-16 2eby-a1-m1-cB_2eby-a1-m1-cA
10 2eby-a1-m1-cA 102 85 0.4000 0.3529 0.4235 9.29e-16 2eby-a1-m1-cB_2eby-a1-m1-cA
11 4mcx-a1-m1-cA 93 73 0.2889 0.2796 0.3562 1.55e-13 4mcx-a1-m1-cC_4mcx-a1-m1-cA
12 4mcx-a1-m1-cC 92 73 0.2889 0.2826 0.3562 1.75e-13 4mcx-a1-m1-cC_4mcx-a1-m1-cA
13 2ict-a2-m2-cA 89 75 0.2556 0.2584 0.3067 1.37e-05 2ict-a2-m1-cA_2ict-a2-m2-cA
14 2ict-a2-m1-cA 89 75 0.2556 0.2584 0.3067 1.37e-05 2ict-a2-m1-cA_2ict-a2-m2-cA
15 6irp-a1-m1-cB 133 50 0.1667 0.1128 0.3000 0.31 6irp-a1-m1-cA_6irp-a1-m1-cB
16 6irp-a1-m1-cA 133 50 0.1667 0.1128 0.3000 0.31 6irp-a1-m1-cA_6irp-a1-m1-cB
17 6u5b-a1-m1-cl 285 84 0.2667 0.0842 0.2857 0.54 6u5b-a1-m1-ck_6u5b-a1-m1-cl
18 6u5b-a1-m1-ck 285 84 0.2667 0.0842 0.2857 0.54 6u5b-a1-m1-ck_6u5b-a1-m1-cl
19 3tr4-a1-m1-cE 166 83 0.2333 0.1265 0.2530 0.93 3tr4-a1-m1-cB_3tr4-a1-m1-cE, 3tr4-a1-m1-cF_3tr4-a1-m1-cE
20 3tr4-a1-m1-cB 166 83 0.2333 0.1265 0.2530 0.93 3tr4-a1-m1-cB_3tr4-a1-m1-cE
21 3tr4-a1-m1-cF 165 83 0.2333 0.1273 0.2530 0.94 3tr4-a1-m1-cF_3tr4-a1-m1-cE
22 3wtb-a2-m1-cF 243 60 0.2222 0.0823 0.3333 3.0 3wtb-a2-m1-cD_3wtb-a2-m1-cF, 3wtb-a2-m1-cE_3wtb-a2-m1-cF
23 3wtb-a2-m1-cE 243 60 0.2222 0.0823 0.3333 3.0 3wtb-a2-m1-cD_3wtb-a2-m1-cE, 3wtb-a2-m1-cE_3wtb-a2-m1-cF
24 3wtb-a2-m1-cD 243 60 0.2222 0.0823 0.3333 3.0 3wtb-a2-m1-cD_3wtb-a2-m1-cE, 3wtb-a2-m1-cD_3wtb-a2-m1-cF
25 3m5p-a1-m2-cA 532 75 0.2778 0.0470 0.3333 3.5 3m5p-a1-m1-cA_3m5p-a1-m2-cA
26 3m5p-a1-m1-cA 532 75 0.2778 0.0470 0.3333 3.5 3m5p-a1-m1-cA_3m5p-a1-m2-cA
27 5u7s-a1-m2-cB 324 44 0.1667 0.0463 0.3409 5.2 5u7s-a1-m1-cB_5u7s-a1-m2-cB, 5u7s-a1-m2-cB_5u7s-a1-m1-cA, 5u7s-a1-m2-cB_5u7s-a1-m2-cA
28 5u7s-a1-m1-cB 324 44 0.1667 0.0463 0.3409 5.2 5u7s-a1-m1-cB_5u7s-a1-m2-cB
29 5u7s-a1-m2-cA 329 44 0.1667 0.0456 0.3409 5.3 5u7s-a1-m2-cB_5u7s-a1-m2-cA
30 5u7s-a1-m1-cA 329 44 0.1667 0.0456 0.3409 5.3 5u7s-a1-m2-cB_5u7s-a1-m1-cA
31 1dhn-a1-m8-cA 121 52 0.1556 0.1157 0.2692 5.3 1dhn-a1-m2-cA_1dhn-a1-m8-cA, 1dhn-a1-m6-cA_1dhn-a1-m8-cA
32 1dhn-a1-m6-cA 121 52 0.1556 0.1157 0.2692 5.3 1dhn-a1-m6-cA_1dhn-a1-m8-cA
33 1dhn-a1-m2-cA 121 52 0.1556 0.1157 0.2692 5.3 1dhn-a1-m2-cA_1dhn-a1-m8-cA
34 1cfr-a1-m4-cA 283 30 0.1222 0.0389 0.3667 5.9 1cfr-a1-m1-cA_1cfr-a1-m4-cA, 1cfr-a1-m2-cA_1cfr-a1-m4-cA, 1cfr-a1-m3-cA_1cfr-a1-m4-cA
35 1cfr-a1-m3-cA 283 30 0.1222 0.0389 0.3667 5.9 1cfr-a1-m3-cA_1cfr-a1-m4-cA
36 1cfr-a1-m2-cA 283 30 0.1222 0.0389 0.3667 5.9 1cfr-a1-m2-cA_1cfr-a1-m4-cA
37 1cfr-a1-m1-cA 283 30 0.1222 0.0389 0.3667 5.9 1cfr-a1-m1-cA_1cfr-a1-m4-cA
38 5b4t-a1-m4-cA 260 32 0.1333 0.0462 0.3750 6.7 5b4t-a1-m1-cA_5b4t-a1-m4-cA, 5b4t-a1-m2-cA_5b4t-a1-m4-cA, 5b4t-a1-m3-cA_5b4t-a1-m4-cA
39 5b4t-a1-m3-cA 260 32 0.1333 0.0462 0.3750 6.7 5b4t-a1-m3-cA_5b4t-a1-m4-cA
40 5b4t-a1-m2-cA 260 32 0.1333 0.0462 0.3750 6.7 5b4t-a1-m2-cA_5b4t-a1-m4-cA
41 5b4t-a1-m1-cA 260 32 0.1333 0.0462 0.3750 6.7 5b4t-a1-m1-cA_5b4t-a1-m4-cA
42 7u6u-a1-m1-cB 399 69 0.2111 0.0476 0.2754 7.5 7u6u-a1-m1-cB_7u6u-a1-m1-cA
43 2hk3-a1-m1-cB 331 33 0.1333 0.0363 0.3636 9.1 2hk3-a1-m1-cA_2hk3-a1-m1-cB
44 2hk3-a1-m1-cA 331 33 0.1333 0.0363 0.3636 9.1 2hk3-a1-m1-cA_2hk3-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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