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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=84)
RPKLYKVMLLNDDYTPREFVTVVLKAVFRMSEDTGRRVMMTAHRFGSAVVVVCERDIAET
KAKEATDLGKEAGFPLMFTTEPEE

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4yjm-a5-m1-cB 84 84 1.0000 1.0000 1.0000 7.72e-58 4yjm-a5-m1-cB_4yjm-a5-m3-cA
2 4yjm-a5-m2-cC 83 83 0.9881 1.0000 1.0000 3.68e-57 4yjm-a5-m2-cC_4yjm-a5-m3-cA
3 4yjm-a5-m3-cA 85 83 0.9881 0.9765 1.0000 4.09e-57 4yjm-a5-m1-cB_4yjm-a5-m3-cA, 4yjm-a5-m2-cC_4yjm-a5-m3-cA
4 3g1b-a1-m1-cA 80 80 0.3810 0.4000 0.4000 7.00e-16 3g1b-a1-m1-cA_3g1b-a1-m1-cB
5 3g1b-a1-m1-cB 81 81 0.3810 0.3951 0.3951 7.34e-16 3g1b-a1-m1-cA_3g1b-a1-m1-cB
6 3o2o-a7-m1-cH 85 80 0.3690 0.3647 0.3875 2.34e-14 3o2o-a7-m1-cG_3o2o-a7-m1-cH
7 3o2o-a7-m1-cG 85 80 0.3690 0.3647 0.3875 2.34e-14 3o2o-a7-m1-cG_3o2o-a7-m1-cH
8 3o2o-a6-m1-cG 85 80 0.3690 0.3647 0.3875 2.34e-14 3o2o-a6-m1-cF_3o2o-a6-m1-cG
9 3o2o-a6-m1-cF 85 80 0.3690 0.3647 0.3875 2.34e-14 3o2o-a6-m1-cF_3o2o-a6-m1-cG
10 7d34-a1-m1-cB 79 80 0.3214 0.3418 0.3375 1.65e-08 7d34-a1-m1-cA_7d34-a1-m1-cB
11 7d34-a1-m1-cA 79 80 0.3214 0.3418 0.3375 1.65e-08 7d34-a1-m1-cA_7d34-a1-m1-cB
12 4otm-a1-m1-cB 118 52 0.1548 0.1102 0.2500 0.22 4otm-a1-m1-cA_4otm-a1-m1-cB
13 4otm-a1-m1-cA 114 52 0.1548 0.1140 0.2500 0.24 4otm-a1-m1-cA_4otm-a1-m1-cB
14 2yxt-a2-m2-cB 304 52 0.2024 0.0559 0.3269 0.68 2yxt-a2-m1-cB_2yxt-a2-m2-cB
15 2yxt-a2-m1-cB 304 52 0.2024 0.0559 0.3269 0.68 2yxt-a2-m1-cB_2yxt-a2-m2-cB
16 4en4-a1-m1-cB 310 52 0.2024 0.0548 0.3269 0.69 4en4-a1-m1-cA_4en4-a1-m1-cB
17 4en4-a1-m1-cA 310 52 0.2024 0.0548 0.3269 0.69 4en4-a1-m1-cA_4en4-a1-m1-cB
18 2p0u-a1-m1-cA 402 27 0.1429 0.0299 0.4444 2.3 2p0u-a1-m1-cB_2p0u-a1-m1-cA
19 2pa6-a2-m4-cB 427 49 0.2143 0.0422 0.3673 2.8 2pa6-a2-m1-cA_2pa6-a2-m4-cB, 2pa6-a2-m2-cB_2pa6-a2-m4-cB, 2pa6-a2-m4-cA_2pa6-a2-m4-cB
20 2pa6-a2-m4-cA 427 49 0.2143 0.0422 0.3673 2.8 2pa6-a2-m4-cA_2pa6-a2-m4-cB
21 2pa6-a2-m2-cB 427 49 0.2143 0.0422 0.3673 2.8 2pa6-a2-m2-cB_2pa6-a2-m4-cB
22 2pa6-a2-m1-cA 427 49 0.2143 0.0422 0.3673 2.8 2pa6-a2-m1-cA_2pa6-a2-m4-cB
23 2p0u-a1-m1-cB 398 27 0.1429 0.0302 0.4444 2.9 2p0u-a1-m1-cB_2p0u-a1-m1-cA
24 4p62-a1-m2-cA 269 65 0.2500 0.0781 0.3231 3.3 4p62-a1-m1-cA_4p62-a1-m2-cA
25 4p62-a1-m1-cA 269 65 0.2500 0.0781 0.3231 3.3 4p62-a1-m1-cA_4p62-a1-m2-cA
26 4nar-a2-m2-cA 411 45 0.1548 0.0316 0.2889 7.0 4nar-a2-m1-cA_4nar-a2-m2-cA
27 4nar-a2-m1-cA 411 45 0.1548 0.0316 0.2889 7.0 4nar-a2-m1-cA_4nar-a2-m2-cA
28 1vgv-a2-m1-cC 358 30 0.1310 0.0307 0.3667 8.1 1vgv-a2-m1-cC_1vgv-a2-m1-cD
29 3b97-a2-m1-cD 431 33 0.1548 0.0302 0.3939 8.3 3b97-a2-m1-cD_3b97-a2-m1-cC
30 3b97-a2-m1-cC 433 33 0.1548 0.0300 0.3939 8.4 3b97-a2-m1-cD_3b97-a2-m1-cC

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Reference:
Jacob Schwartz et al.

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