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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=41)
RQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQH

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3a2a-a2-m1-cD 41 41 1.0000 1.0000 1.0000 1.75e-22 3a2a-a2-m1-cC_3a2a-a2-m1-cD
2 3a2a-a2-m1-cC 41 41 1.0000 1.0000 1.0000 1.75e-22 3a2a-a2-m1-cC_3a2a-a2-m1-cD
3 3vmx-a2-m1-cC 48 41 0.8537 0.7292 0.8537 1.97e-19 3vmx-a2-m1-cD_3vmx-a2-m1-cC
4 3vmx-a2-m1-cD 47 41 0.8537 0.7447 0.8537 2.25e-19 3vmx-a2-m1-cD_3vmx-a2-m1-cC
5 3vyi-a2-m1-cF 49 41 0.6585 0.5510 0.6585 6.15e-13 3vyi-a2-m1-cE_3vyi-a2-m1-cF
6 3vyi-a2-m1-cE 46 41 0.6585 0.5870 0.6585 8.66e-13 3vyi-a2-m1-cE_3vyi-a2-m1-cF
7 3vyi-a1-m1-cB 46 41 0.6585 0.5870 0.6585 8.66e-13 3vyi-a1-m1-cA_3vyi-a1-m1-cB
8 3vyi-a1-m1-cA 46 41 0.6585 0.5870 0.6585 8.66e-13 3vyi-a1-m1-cA_3vyi-a1-m1-cB
9 5tby-a1-m1-cA 954 27 0.2927 0.0126 0.4444 1.2 5tby-a1-m1-cB_5tby-a1-m1-cA
10 5tby-a1-m1-cB 950 27 0.2927 0.0126 0.4444 1.2 5tby-a1-m1-cB_5tby-a1-m1-cA
11 2fxo-a2-m1-cD 127 27 0.2927 0.0945 0.4444 1.3 2fxo-a2-m1-cC_2fxo-a2-m1-cD
12 2fxo-a2-m1-cC 127 27 0.2927 0.0945 0.4444 1.3 2fxo-a2-m1-cC_2fxo-a2-m1-cD
13 5ix1-a1-m1-cA 414 27 0.2439 0.0242 0.3704 6.3 5ix1-a1-m1-cA_5ix1-a1-m1-cB
14 5ix1-a1-m1-cB 419 27 0.2439 0.0239 0.3704 6.8 5ix1-a1-m1-cA_5ix1-a1-m1-cB
15 7x98-a2-m1-cD 398 23 0.2195 0.0226 0.3913 9.1 7x98-a2-m1-cD_7x98-a2-m1-cC
16 7x98-a2-m1-cC 399 23 0.2195 0.0226 0.3913 9.1 7x98-a2-m1-cD_7x98-a2-m1-cC

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Reference:
Jacob Schwartz et al.

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