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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=74)
RRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAETQKLISEIDLLRKQNE
QLKHKLEQLRNSCA

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5i4z-a1-m1-cB 74 74 1.0000 1.0000 1.0000 3.89e-48 5i4z-a1-m1-cA_5i4z-a1-m1-cB
2 5i4z-a1-m1-cA 74 74 1.0000 1.0000 1.0000 3.89e-48 5i4z-a1-m1-cA_5i4z-a1-m1-cB
3 1r05-a1-m1-cB 87 72 0.3919 0.3333 0.4028 1.55e-10 1r05-a1-m1-cA_1r05-a1-m1-cB
4 1r05-a1-m1-cA 87 72 0.3919 0.3333 0.4028 1.55e-10 1r05-a1-m1-cA_1r05-a1-m1-cB
5 5eyo-a2-m2-cC 88 59 0.3378 0.2841 0.4237 4.49e-09 5eyo-a2-m1-cC_5eyo-a2-m2-cC
6 5eyo-a2-m1-cC 88 59 0.3378 0.2841 0.4237 4.49e-09 5eyo-a2-m1-cC_5eyo-a2-m2-cC
7 1tbg-a1-m1-cD 340 26 0.1622 0.0353 0.4615 0.025 1tbg-a1-m1-cB_1tbg-a1-m1-cD, 1tbg-a1-m1-cC_1tbg-a1-m1-cD
8 1tbg-a1-m1-cC 340 26 0.1622 0.0353 0.4615 0.025 1tbg-a1-m1-cC_1tbg-a1-m1-cD
9 1tbg-a1-m1-cB 340 26 0.1622 0.0353 0.4615 0.025 1tbg-a1-m1-cB_1tbg-a1-m1-cD
10 5gnj-a2-m1-cA 74 66 0.3108 0.3108 0.3485 0.031 5gnj-a2-m1-cA_5gnj-a2-m1-cB
11 5gnj-a2-m1-cB 77 66 0.3108 0.2987 0.3485 0.036 5gnj-a2-m1-cA_5gnj-a2-m1-cB
12 6m8s-a1-m1-cK 332 25 0.1622 0.0361 0.4800 0.037 6m8s-a1-m1-cK_6m8s-a1-m1-cG
13 6m8s-a1-m1-cG 334 25 0.1622 0.0359 0.4800 0.037 6m8s-a1-m1-cK_6m8s-a1-m1-cG
14 7f2f-a1-m1-cB 94 48 0.2973 0.2340 0.4583 0.040 7f2f-a1-m1-cA_7f2f-a1-m1-cB
15 6zk5-a1-m1-cB 316 64 0.2568 0.0601 0.2969 0.28 6zk5-a1-m1-cA_6zk5-a1-m1-cB
16 6zk5-a1-m1-cA 316 64 0.2568 0.0601 0.2969 0.28 6zk5-a1-m1-cA_6zk5-a1-m1-cB
17 6zk3-a2-m1-cD 317 64 0.2432 0.0568 0.2812 1.4 6zk3-a2-m1-cD_6zk3-a2-m1-cC
18 6zk3-a2-m1-cC 318 64 0.2432 0.0566 0.2812 1.4 6zk3-a2-m1-cD_6zk3-a2-m1-cC
19 3zif-a1-m9-cQ 107 40 0.1892 0.1308 0.3500 2.0 3zif-a1-m57-cQ_3zif-a1-m9-cQ
20 3zif-a1-m57-cQ 107 40 0.1892 0.1308 0.3500 2.0 3zif-a1-m57-cQ_3zif-a1-m9-cQ
21 4aya-a1-m1-cB 48 38 0.1486 0.2292 0.2895 2.2 4aya-a1-m1-cB_4aya-a1-m1-cA
22 4aya-a1-m1-cA 59 31 0.1486 0.1864 0.3548 4.1 4aya-a1-m1-cB_4aya-a1-m1-cA
23 1xvw-a1-m4-cA 157 43 0.1892 0.0892 0.3256 5.6 1xvw-a1-m4-cA_1xvw-a1-m4-cB
24 1xvw-a1-m4-cB 159 43 0.1892 0.0881 0.3256 6.1 1xvw-a1-m4-cA_1xvw-a1-m4-cB
25 4x0x-a2-m1-cD 154 43 0.1892 0.0909 0.3256 6.2 4x0x-a2-m1-cC_4x0x-a2-m1-cD
26 4x0x-a2-m1-cC 154 43 0.1892 0.0909 0.3256 6.2 4x0x-a2-m1-cC_4x0x-a2-m1-cD
27 1xxu-a1-m1-cC 153 43 0.1892 0.0915 0.3256 6.4 1xxu-a1-m1-cA_1xxu-a1-m1-cC
28 1xxu-a1-m1-cA 153 43 0.1892 0.0915 0.3256 6.4 1xxu-a1-m1-cA_1xxu-a1-m1-cC
29 3o4z-a6-m1-cD 572 58 0.2568 0.0332 0.3276 6.5 3o4z-a6-m1-cB_3o4z-a6-m1-cD
30 3o4z-a6-m1-cB 572 58 0.2568 0.0332 0.3276 6.5 3o4z-a6-m1-cB_3o4z-a6-m1-cD
31 5mif-a1-m1-cC 301 26 0.1216 0.0299 0.3462 6.6 5mif-a1-m1-cC_5mif-a1-m1-cA
32 5mif-a1-m1-cA 302 26 0.1216 0.0298 0.3462 6.6 5mif-a1-m1-cC_5mif-a1-m1-cA
33 2lfh-a1-m1-cB 68 41 0.1351 0.1471 0.2439 7.6 2lfh-a1-m1-cA_2lfh-a1-m1-cB
34 2lfh-a1-m1-cA 68 41 0.1351 0.1471 0.2439 7.6 2lfh-a1-m1-cA_2lfh-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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