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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=66)
RRRYRVVVERDEEGYFVAHVPELHAHTQAQSFEELLRRLQEAIAVSLEEERAEVVGLEGA
LEIEAA

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2yzt-a1-m2-cA 66 66 1.0000 1.0000 1.0000 1.07e-39 2yzt-a1-m1-cA_2yzt-a1-m2-cA
2 2yzt-a1-m1-cA 66 66 1.0000 1.0000 1.0000 1.07e-39 2yzt-a1-m1-cA_2yzt-a1-m2-cA
3 1i3n-a1-m1-cB 345 57 0.3030 0.0580 0.3509 0.52 1i3n-a1-m1-cB_1i3n-a1-m1-cA
4 1i3n-a1-m1-cA 347 57 0.3030 0.0576 0.3509 0.58 1i3n-a1-m1-cB_1i3n-a1-m1-cA
5 3lmk-a1-m1-cA 438 28 0.1515 0.0228 0.3571 1.1 3lmk-a1-m1-cA_3lmk-a1-m1-cB
6 3lmk-a1-m1-cB 439 28 0.1515 0.0228 0.3571 1.1 3lmk-a1-m1-cA_3lmk-a1-m1-cB
7 6n4x-a1-m1-cB 487 28 0.1515 0.0205 0.3571 1.1 6n4x-a1-m1-cB_6n4x-a1-m1-cA
8 6n4x-a1-m1-cA 506 28 0.1515 0.0198 0.3571 1.1 6n4x-a1-m1-cB_6n4x-a1-m1-cA
9 7fd9-a1-m1-cB 767 28 0.1515 0.0130 0.3571 1.1 7fd9-a1-m1-cA_7fd9-a1-m1-cB
10 7fd9-a1-m1-cA 767 28 0.1515 0.0130 0.3571 1.1 7fd9-a1-m1-cA_7fd9-a1-m1-cB
11 7d8z-a1-m1-cB 895 20 0.1818 0.0134 0.6000 1.6 7d8z-a1-m1-cA_7d8z-a1-m1-cB
12 7d8z-a1-m1-cA 895 20 0.1818 0.0134 0.6000 1.6 7d8z-a1-m1-cA_7d8z-a1-m1-cB
13 7d14-a1-m1-cB 850 20 0.1818 0.0141 0.6000 2.2 7d14-a1-m1-cA_7d14-a1-m1-cB
14 7d14-a1-m1-cA 850 20 0.1818 0.0141 0.6000 2.2 7d14-a1-m1-cA_7d14-a1-m1-cB
15 3r2u-a1-m1-cB 336 41 0.2121 0.0417 0.3415 3.0 3r2u-a1-m1-cB_3r2u-a1-m1-cD
16 3r2u-a1-m1-cD 337 41 0.2121 0.0415 0.3415 3.0 3r2u-a1-m1-cB_3r2u-a1-m1-cD, 3r2u-a1-m1-cD_3r2u-a1-m1-cA, 3r2u-a1-m1-cD_3r2u-a1-m1-cC
17 3r2u-a1-m1-cC 338 41 0.2121 0.0414 0.3415 3.0 3r2u-a1-m1-cD_3r2u-a1-m1-cC
18 3r2u-a1-m1-cA 348 41 0.2121 0.0402 0.3415 3.0 3r2u-a1-m1-cD_3r2u-a1-m1-cA
19 6b04-a1-m1-cB 338 31 0.1515 0.0296 0.3226 4.2 6b04-a1-m1-cB_6b04-a1-m1-cA
20 6b04-a1-m1-cA 341 31 0.1515 0.0293 0.3226 4.7 6b04-a1-m1-cB_6b04-a1-m1-cA
21 2eul-a7-m8-cB 156 54 0.2727 0.1154 0.3333 5.7 2eul-a7-m1-cC_2eul-a7-m8-cB
22 2eul-a7-m1-cC 156 54 0.2727 0.1154 0.3333 5.7 2eul-a7-m1-cA_2eul-a7-m1-cC, 2eul-a7-m1-cC_2eul-a7-m8-cB
23 2eul-a7-m1-cA 156 54 0.2727 0.1154 0.3333 5.7 2eul-a7-m1-cA_2eul-a7-m1-cC
24 2eul-a6-m7-cB 156 54 0.2727 0.1154 0.3333 5.7 2eul-a6-m1-cC_2eul-a6-m7-cB
25 2eul-a6-m1-cC 156 54 0.2727 0.1154 0.3333 5.7 2eul-a6-m1-cC_2eul-a6-m7-cB
26 2eul-a5-m5-cD 156 54 0.2727 0.1154 0.3333 5.7 2eul-a5-m4-cC_2eul-a5-m5-cD
27 2eul-a5-m4-cC 156 54 0.2727 0.1154 0.3333 5.7 2eul-a5-m4-cC_2eul-a5-m5-cD
28 2eul-a3-m1-cD 156 54 0.2727 0.1154 0.3333 5.7 2eul-a3-m1-cC_2eul-a3-m1-cD
29 2eul-a3-m1-cC 156 54 0.2727 0.1154 0.3333 5.7 2eul-a3-m1-cC_2eul-a3-m1-cD

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Reference:
Jacob Schwartz et al.

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