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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=92)
RSLNRVHLLGRVGQDPVLRNPVTIFSLATNEMQKTTWHRISVFRPGLRDVAYQYVKKGSR
IYLEGKIDYGEYMDKNNVRRQATTIIADNIIF

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2dud-a2-m2-cB 92 92 1.0000 1.0000 1.0000 2.29e-65 2dud-a2-m2-cB_2dud-a2-m1-cA, 2dud-a2-m2-cB_2dud-a2-m2-cA
2 2dud-a2-m2-cA 95 95 1.0000 0.9684 0.9684 4.44e-63 2dud-a2-m2-cB_2dud-a2-m2-cA
3 2dud-a2-m1-cA 95 95 1.0000 0.9684 0.9684 4.44e-63 2dud-a2-m2-cB_2dud-a2-m1-cA
4 3tqy-a1-m1-cD 96 93 0.4239 0.4062 0.4194 8.23e-19 3tqy-a1-m1-cD_3tqy-a1-m1-cC
5 5odn-a1-m1-cD 106 97 0.3913 0.3396 0.3711 7.68e-17 5odn-a1-m1-cA_5odn-a1-m1-cD
6 1kaw-a1-m1-cD 96 89 0.3587 0.3438 0.3708 2.43e-16 1kaw-a1-m1-cC_1kaw-a1-m1-cD
7 1kaw-a1-m1-cC 96 89 0.3587 0.3438 0.3708 2.43e-16 1kaw-a1-m1-cA_1kaw-a1-m1-cC, 1kaw-a1-m1-cC_1kaw-a1-m1-cD
8 1kaw-a1-m1-cA 96 89 0.3587 0.3438 0.3708 2.43e-16 1kaw-a1-m1-cA_1kaw-a1-m1-cC
9 3tqy-a1-m1-cC 106 103 0.4457 0.3868 0.3981 9.06e-16 3tqy-a1-m1-cD_3tqy-a1-m1-cC
10 1sru-a1-m1-cC 96 78 0.3370 0.3229 0.3974 2.01e-15 1sru-a1-m1-cC_1sru-a1-m1-cA
11 5odn-a1-m1-cC 102 98 0.3913 0.3529 0.3673 2.36e-15 5odn-a1-m1-cC_5odn-a1-m1-cF
12 3pgz-a1-m1-cA 109 95 0.3913 0.3303 0.3789 3.96e-15 3pgz-a1-m1-cA_3pgz-a1-m1-cB
13 3ulp-a1-m1-cC 116 101 0.3913 0.3103 0.3564 5.74e-15 3ulp-a1-m1-cD_3ulp-a1-m1-cC
14 5odn-a1-m1-cF 105 102 0.3913 0.3429 0.3529 1.14e-14 5odn-a1-m1-cC_5odn-a1-m1-cF
15 3pgz-a1-m1-cB 114 100 0.3913 0.3158 0.3600 2.31e-14 3pgz-a1-m1-cA_3pgz-a1-m1-cB
16 5odn-a1-m1-cH 99 97 0.3804 0.3535 0.3608 2.42e-14 5odn-a1-m1-cA_5odn-a1-m1-cH
17 5odn-a1-m1-cA 99 97 0.3804 0.3535 0.3608 2.42e-14 5odn-a1-m1-cA_5odn-a1-m1-cD, 5odn-a1-m1-cA_5odn-a1-m1-cH
18 7f25-a1-m1-cB 106 93 0.3696 0.3208 0.3656 1.02e-13 7f25-a1-m1-cA_7f25-a1-m1-cB
19 7f25-a1-m1-cA 106 93 0.3696 0.3208 0.3656 1.02e-13 7f25-a1-m1-cA_7f25-a1-m1-cB
20 3ulp-a1-m1-cB 114 100 0.3913 0.3158 0.3600 1.14e-13 3ulp-a1-m1-cD_3ulp-a1-m1-cB
21 3ulp-a1-m1-cD 113 99 0.3913 0.3186 0.3636 1.24e-13 3ulp-a1-m1-cD_3ulp-a1-m1-cA, 3ulp-a1-m1-cD_3ulp-a1-m1-cB, 3ulp-a1-m1-cD_3ulp-a1-m1-cC
22 3lgj-a1-m1-cB 97 77 0.3370 0.3196 0.4026 1.61e-13 3lgj-a1-m1-cA_3lgj-a1-m1-cB
23 1sru-a1-m1-cD 101 83 0.3370 0.3069 0.3735 3.02e-13 1sru-a1-m1-cA_1sru-a1-m1-cD
24 1sru-a1-m1-cA 100 82 0.3370 0.3100 0.3780 4.30e-13 1sru-a1-m1-cA_1sru-a1-m1-cD, 1sru-a1-m1-cC_1sru-a1-m1-cA
25 3ulp-a1-m1-cA 114 82 0.3370 0.2719 0.3780 5.88e-13 3ulp-a1-m1-cD_3ulp-a1-m1-cA
26 4mz9-a1-m1-cD 114 103 0.3587 0.2895 0.3204 8.50e-13 4mz9-a1-m1-cB_4mz9-a1-m1-cD, 4mz9-a1-m1-cC_4mz9-a1-m1-cD
27 4mz9-a1-m1-cC 114 103 0.3587 0.2895 0.3204 8.50e-13 4mz9-a1-m1-cB_4mz9-a1-m1-cC, 4mz9-a1-m1-cC_4mz9-a1-m1-cD
28 4mz9-a1-m1-cB 114 103 0.3587 0.2895 0.3204 8.50e-13 4mz9-a1-m1-cB_4mz9-a1-m1-cC, 4mz9-a1-m1-cB_4mz9-a1-m1-cD
29 3lgj-a1-m1-cA 95 70 0.3261 0.3158 0.4286 1.00e-12 3lgj-a1-m1-cA_3lgj-a1-m1-cB
30 5odn-a1-m1-cE 105 106 0.3804 0.3333 0.3302 4.04e-11 5odn-a1-m1-cG_5odn-a1-m1-cE
31 5odp-a1-m1-cA 99 106 0.3696 0.3434 0.3208 3.38e-10 5odp-a1-m1-cA_5odp-a1-m1-cG
32 5odn-a1-m1-cG 102 81 0.3261 0.2941 0.3704 3.77e-10 5odn-a1-m1-cG_5odn-a1-m1-cE
33 5odp-a1-m1-cG 100 81 0.3261 0.3000 0.3704 6.06e-10 5odp-a1-m1-cA_5odp-a1-m1-cG
34 7d8j-a1-m2-cA 112 102 0.3370 0.2768 0.3039 2.39e-06 7d8j-a1-m1-cA_7d8j-a1-m2-cA, 7d8j-a1-m2-cB_7d8j-a1-m2-cA
35 7d8j-a1-m1-cA 112 102 0.3370 0.2768 0.3039 2.39e-06 7d8j-a1-m1-cA_7d8j-a1-m2-cA, 7d8j-a1-m2-cB_7d8j-a1-m1-cA
36 6bhw-a2-m1-cF 96 95 0.3152 0.3021 0.3053 5.99e-06 6bhw-a2-m1-cF_6bhw-a2-m1-cE
37 2vw9-a1-m2-cB 105 44 0.1739 0.1524 0.3636 2.10e-05 2vw9-a1-m1-cB_2vw9-a1-m2-cB
38 2vw9-a1-m1-cB 105 44 0.1739 0.1524 0.3636 2.10e-05 2vw9-a1-m1-cB_2vw9-a1-m2-cB
39 6bhx-a1-m1-cC 102 96 0.3152 0.2843 0.3021 9.11e-05 6bhx-a1-m1-cA_6bhx-a1-m1-cC
40 6bhw-a2-m1-cE 99 97 0.3152 0.2929 0.2990 1.31e-04 6bhw-a2-m1-cE_6bhw-a2-m1-cG, 6bhw-a2-m1-cF_6bhw-a2-m1-cE
41 6bhw-a2-m1-cG 101 99 0.3152 0.2871 0.2929 2.75e-04 6bhw-a2-m1-cE_6bhw-a2-m1-cG
42 5xgt-a1-m1-cA 104 102 0.3152 0.2788 0.2843 4.73e-04 5xgt-a1-m1-cA_5xgt-a1-m1-cB
43 5xgt-a1-m1-cB 105 102 0.3152 0.2762 0.2843 5.11e-04 5xgt-a1-m1-cA_5xgt-a1-m1-cB
44 1z9f-a2-m4-cA 89 68 0.2500 0.2584 0.3382 6.71e-04 1z9f-a2-m1-cA_1z9f-a2-m4-cA, 1z9f-a2-m3-cA_1z9f-a2-m4-cA
45 1z9f-a2-m3-cA 89 68 0.2500 0.2584 0.3382 6.71e-04 1z9f-a2-m3-cA_1z9f-a2-m4-cA
46 1z9f-a2-m1-cA 89 68 0.2500 0.2584 0.3382 6.71e-04 1z9f-a2-m1-cA_1z9f-a2-m4-cA
47 3udg-a2-m1-cC 214 97 0.2609 0.1121 0.2474 0.001 3udg-a2-m1-cB_3udg-a2-m1-cC
48 7d8j-a1-m2-cB 98 102 0.3152 0.2959 0.2843 0.002 7d8j-a1-m2-cB_7d8j-a1-m1-cA, 7d8j-a1-m2-cB_7d8j-a1-m2-cA
49 3udg-a2-m1-cB 214 94 0.2500 0.1075 0.2447 0.003 3udg-a2-m1-cB_3udg-a2-m1-cC
50 3udg-a2-m1-cB 214 98 0.2826 0.1215 0.2653 7.1 3udg-a2-m1-cB_3udg-a2-m1-cC
51 6cqk-a1-m1-cD 87 64 0.1957 0.2069 0.2812 0.006 6cqk-a1-m1-cD_6cqk-a1-m1-cB
52 6bhx-a1-m1-cA 98 84 0.3043 0.2857 0.3333 0.007 6bhx-a1-m1-cA_6bhx-a1-m1-cC
53 6cqk-a1-m1-cB 93 68 0.1957 0.1935 0.2647 0.011 6cqk-a1-m1-cD_6cqk-a1-m1-cB
54 1se8-a1-m2-cA 205 85 0.2391 0.1073 0.2588 0.096 1se8-a1-m1-cA_1se8-a1-m2-cA
55 1se8-a1-m1-cA 205 85 0.2391 0.1073 0.2588 0.096 1se8-a1-m1-cA_1se8-a1-m2-cA
56 3vdy-a1-m1-cA 101 102 0.3152 0.2871 0.2843 0.10 3vdy-a1-m2-cB_3vdy-a1-m1-cA
57 6cqo-a1-m1-cG 87 60 0.1739 0.1839 0.2667 0.16 6cqo-a1-m1-cG_6cqo-a1-m1-cA
58 6cqo-a1-m1-cA 93 64 0.1848 0.1828 0.2656 0.17 6cqo-a1-m1-cG_6cqo-a1-m1-cA
59 3eiv-a2-m1-cB 111 92 0.2283 0.1892 0.2283 0.59 3eiv-a2-m1-cA_3eiv-a2-m1-cB
60 3vdy-a1-m2-cB 97 77 0.2500 0.2371 0.2987 1.4 3vdy-a1-m1-cB_3vdy-a1-m2-cB, 3vdy-a1-m2-cB_3vdy-a1-m1-cA
61 3vdy-a1-m1-cB 97 77 0.2500 0.2371 0.2987 1.4 3vdy-a1-m1-cB_3vdy-a1-m2-cB
62 2fxq-a1-m2-cA 197 92 0.2826 0.1320 0.2826 1.5 2fxq-a1-m1-cA_2fxq-a1-m2-cA
63 2fxq-a1-m1-cA 197 92 0.2826 0.1320 0.2826 1.5 2fxq-a1-m1-cA_2fxq-a1-m2-cA
64 4jqp-a1-m1-cB 330 20 0.1087 0.0303 0.5000 2.8 4jqp-a1-m1-cA_4jqp-a1-m1-cB
65 4jqp-a1-m1-cA 330 20 0.1087 0.0303 0.5000 2.8 4jqp-a1-m1-cA_4jqp-a1-m1-cB
66 6w8p-a1-m1-cA 418 27 0.1522 0.0335 0.5185 4.4 6w8p-a1-m1-cA_6w8p-a1-m1-cB
67 6w8p-a1-m1-cB 426 27 0.1522 0.0329 0.5185 4.5 6w8p-a1-m1-cA_6w8p-a1-m1-cB
68 2ihf-a1-m2-cA 205 49 0.1848 0.0829 0.3469 6.9 2ihf-a1-m1-cA_2ihf-a1-m2-cA
69 2ihf-a1-m1-cA 205 49 0.1848 0.0829 0.3469 6.9 2ihf-a1-m1-cA_2ihf-a1-m2-cA
70 7pik-a1-m1-cC 557 31 0.1087 0.0180 0.3226 8.7 7pik-a1-m1-cD_7pik-a1-m1-cC

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Reference:
Jacob Schwartz et al.

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