Home Research COVID-19 Services Publications People Teaching Job Opening News Forum
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

HomodimerDB
>protein (length=95)
RSLNRVHLLGRVGQDPVLRNPVTIFSLATNEMWVSQKTTWHRISVFRPGLRDVAYQYVKK
GSRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIF

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Dimers
1 2dud-a2-m2-cA 95 95 1.0000 1.0000 1.0000 7.93e-68 2dud-a2-m2-cB_2dud-a2-m2-cA
2 2dud-a2-m1-cA 95 95 1.0000 1.0000 1.0000 7.93e-68 2dud-a2-m2-cB_2dud-a2-m1-cA
3 2dud-a2-m2-cB 92 95 0.9684 1.0000 0.9684 4.58e-63 2dud-a2-m2-cB_2dud-a2-m1-cA, 2dud-a2-m2-cB_2dud-a2-m2-cA
4 3tqy-a1-m1-cC 106 103 0.4211 0.3774 0.3883 1.97e-17 3tqy-a1-m1-cD_3tqy-a1-m1-cC
5 3tqy-a1-m1-cD 96 96 0.4105 0.4062 0.4062 6.23e-17 3tqy-a1-m1-cD_3tqy-a1-m1-cC
6 3ulp-a1-m1-cC 116 101 0.3895 0.3190 0.3663 6.80e-17 3ulp-a1-m1-cD_3ulp-a1-m1-cC
7 3pgz-a1-m1-cA 109 95 0.4000 0.3486 0.4000 1.03e-16 3pgz-a1-m1-cA_3pgz-a1-m1-cB
8 1sru-a1-m1-cC 96 80 0.3368 0.3333 0.4000 1.62e-16 1sru-a1-m1-cC_1sru-a1-m1-cA
9 3pgz-a1-m1-cB 114 100 0.3895 0.3246 0.3700 8.85e-16 3pgz-a1-m1-cA_3pgz-a1-m1-cB
10 7f25-a1-m1-cB 106 93 0.3684 0.3302 0.3763 1.21e-15 7f25-a1-m1-cA_7f25-a1-m1-cB
11 7f25-a1-m1-cA 106 93 0.3684 0.3302 0.3763 1.21e-15 7f25-a1-m1-cA_7f25-a1-m1-cB
12 3ulp-a1-m1-cB 114 100 0.3895 0.3246 0.3700 1.34e-15 3ulp-a1-m1-cD_3ulp-a1-m1-cB
13 3ulp-a1-m1-cD 113 99 0.3895 0.3274 0.3737 1.38e-15 3ulp-a1-m1-cD_3ulp-a1-m1-cA, 3ulp-a1-m1-cD_3ulp-a1-m1-cB, 3ulp-a1-m1-cD_3ulp-a1-m1-cC
14 3ulp-a1-m1-cA 114 82 0.3368 0.2807 0.3902 5.59e-15 3ulp-a1-m1-cD_3ulp-a1-m1-cA
15 1kaw-a1-m1-cD 96 92 0.3579 0.3542 0.3696 6.71e-15 1kaw-a1-m1-cC_1kaw-a1-m1-cD
16 1kaw-a1-m1-cC 96 92 0.3579 0.3542 0.3696 6.71e-15 1kaw-a1-m1-cA_1kaw-a1-m1-cC, 1kaw-a1-m1-cC_1kaw-a1-m1-cD
17 1kaw-a1-m1-cA 96 92 0.3579 0.3542 0.3696 6.71e-15 1kaw-a1-m1-cA_1kaw-a1-m1-cC
18 5odn-a1-m1-cF 105 102 0.3789 0.3429 0.3529 8.54e-15 5odn-a1-m1-cC_5odn-a1-m1-cF
19 5odn-a1-m1-cD 106 100 0.3789 0.3396 0.3600 8.95e-15 5odn-a1-m1-cA_5odn-a1-m1-cD
20 4mz9-a1-m1-cD 114 103 0.3579 0.2982 0.3301 1.25e-14 4mz9-a1-m1-cB_4mz9-a1-m1-cD, 4mz9-a1-m1-cC_4mz9-a1-m1-cD
21 4mz9-a1-m1-cC 114 103 0.3579 0.2982 0.3301 1.25e-14 4mz9-a1-m1-cB_4mz9-a1-m1-cC, 4mz9-a1-m1-cC_4mz9-a1-m1-cD
22 4mz9-a1-m1-cB 114 103 0.3579 0.2982 0.3301 1.25e-14 4mz9-a1-m1-cB_4mz9-a1-m1-cC, 4mz9-a1-m1-cB_4mz9-a1-m1-cD
23 5odn-a1-m1-cC 102 100 0.3789 0.3529 0.3600 1.57e-14 5odn-a1-m1-cC_5odn-a1-m1-cF
24 1sru-a1-m1-cD 101 85 0.3368 0.3168 0.3765 2.50e-14 1sru-a1-m1-cA_1sru-a1-m1-cD
25 1sru-a1-m1-cA 100 84 0.3368 0.3200 0.3810 3.46e-14 1sru-a1-m1-cA_1sru-a1-m1-cD, 1sru-a1-m1-cC_1sru-a1-m1-cA
26 5odn-a1-m1-cH 99 100 0.3684 0.3535 0.3500 1.19e-13 5odn-a1-m1-cA_5odn-a1-m1-cH
27 5odn-a1-m1-cA 99 100 0.3684 0.3535 0.3500 1.19e-13 5odn-a1-m1-cA_5odn-a1-m1-cD, 5odn-a1-m1-cA_5odn-a1-m1-cH
28 3lgj-a1-m1-cA 95 68 0.2737 0.2737 0.3824 5.69e-13 3lgj-a1-m1-cA_3lgj-a1-m1-cB
29 3lgj-a1-m1-cB 97 80 0.3263 0.3196 0.3875 6.79e-13 3lgj-a1-m1-cA_3lgj-a1-m1-cB
30 5odn-a1-m1-cE 105 106 0.3684 0.3333 0.3302 3.20e-11 5odn-a1-m1-cG_5odn-a1-m1-cE
31 5odp-a1-m1-cA 99 106 0.3579 0.3434 0.3208 1.83e-10 5odp-a1-m1-cA_5odp-a1-m1-cG
32 5odn-a1-m1-cG 102 81 0.3158 0.2941 0.3704 2.30e-10 5odn-a1-m1-cG_5odn-a1-m1-cE
33 5odp-a1-m1-cG 100 81 0.3158 0.3000 0.3704 3.39e-10 5odp-a1-m1-cA_5odp-a1-m1-cG
34 7d8j-a1-m2-cA 112 102 0.3263 0.2768 0.3039 3.00e-07 7d8j-a1-m1-cA_7d8j-a1-m2-cA, 7d8j-a1-m2-cB_7d8j-a1-m2-cA
35 7d8j-a1-m1-cA 112 102 0.3263 0.2768 0.3039 3.00e-07 7d8j-a1-m1-cA_7d8j-a1-m2-cA, 7d8j-a1-m2-cB_7d8j-a1-m1-cA
36 2vw9-a1-m2-cB 105 103 0.2842 0.2571 0.2621 5.20e-06 2vw9-a1-m1-cB_2vw9-a1-m2-cB
37 2vw9-a1-m1-cB 105 103 0.2842 0.2571 0.2621 5.20e-06 2vw9-a1-m1-cB_2vw9-a1-m2-cB
38 6bhw-a2-m1-cG 101 105 0.3263 0.3069 0.2952 1.61e-05 6bhw-a2-m1-cE_6bhw-a2-m1-cG
39 6bhw-a2-m1-cF 96 101 0.3263 0.3229 0.3069 4.26e-05 6bhw-a2-m1-cF_6bhw-a2-m1-cE
40 6bhw-a2-m1-cE 99 98 0.3053 0.2929 0.2959 5.56e-05 6bhw-a2-m1-cE_6bhw-a2-m1-cG, 6bhw-a2-m1-cF_6bhw-a2-m1-cE
41 5xgt-a1-m1-cA 104 102 0.3053 0.2788 0.2843 5.61e-05 5xgt-a1-m1-cA_5xgt-a1-m1-cB
42 5xgt-a1-m1-cB 105 102 0.3053 0.2762 0.2843 6.83e-05 5xgt-a1-m1-cA_5xgt-a1-m1-cB
43 6bhx-a1-m1-cC 102 98 0.3053 0.2843 0.2959 1.13e-04 6bhx-a1-m1-cA_6bhx-a1-m1-cC
44 7d8j-a1-m2-cB 98 102 0.3053 0.2959 0.2843 2.73e-04 7d8j-a1-m2-cB_7d8j-a1-m1-cA, 7d8j-a1-m2-cB_7d8j-a1-m2-cA
45 3udg-a2-m1-cB 214 94 0.2632 0.1168 0.2660 3.84e-04 3udg-a2-m1-cB_3udg-a2-m1-cC
46 3udg-a2-m1-cB 214 98 0.2737 0.1215 0.2653 2.8 3udg-a2-m1-cB_3udg-a2-m1-cC
47 3udg-a2-m1-cC 214 97 0.2526 0.1121 0.2474 6.34e-04 3udg-a2-m1-cB_3udg-a2-m1-cC
48 6bhx-a1-m1-cA 98 84 0.2947 0.2857 0.3333 0.002 6bhx-a1-m1-cA_6bhx-a1-m1-cC
49 1se8-a1-m2-cA 205 85 0.2316 0.1073 0.2588 0.022 1se8-a1-m1-cA_1se8-a1-m2-cA
50 1se8-a1-m1-cA 205 85 0.2316 0.1073 0.2588 0.022 1se8-a1-m1-cA_1se8-a1-m2-cA
51 6cqk-a1-m1-cD 87 67 0.1789 0.1954 0.2537 0.032 6cqk-a1-m1-cD_6cqk-a1-m1-cB
52 6cqk-a1-m1-cB 93 71 0.1789 0.1828 0.2394 0.071 6cqk-a1-m1-cD_6cqk-a1-m1-cB
53 3vdy-a1-m1-cA 101 102 0.2842 0.2673 0.2647 0.16 3vdy-a1-m2-cB_3vdy-a1-m1-cA
54 6cqo-a1-m1-cA 93 65 0.1895 0.1935 0.2769 0.33 6cqo-a1-m1-cG_6cqo-a1-m1-cA
55 6cqo-a1-m1-cG 87 32 0.1158 0.1264 0.3438 0.36 6cqo-a1-m1-cG_6cqo-a1-m1-cA
56 3eiv-a2-m1-cB 111 92 0.2105 0.1802 0.2174 0.58 3eiv-a2-m1-cA_3eiv-a2-m1-cB
57 7khf-a1-m1-cL 214 53 0.1789 0.0794 0.3208 0.85 7khf-a1-m1-cB_7khf-a1-m1-cL
58 7khf-a1-m1-cB 214 53 0.1789 0.0794 0.3208 0.85 7khf-a1-m1-cB_7khf-a1-m1-cL
59 6w8p-a1-m1-cB 426 58 0.2211 0.0493 0.3621 1.5 6w8p-a1-m1-cA_6w8p-a1-m1-cB
60 5dur-a1-m1-cL 212 52 0.1789 0.0802 0.3269 1.6 5dur-a1-m1-cD_5dur-a1-m1-cL
61 5dur-a1-m1-cD 212 52 0.1789 0.0802 0.3269 1.6 5dur-a1-m1-cD_5dur-a1-m1-cL
62 3vdy-a1-m2-cB 97 77 0.2211 0.2165 0.2727 2.2 3vdy-a1-m1-cB_3vdy-a1-m2-cB, 3vdy-a1-m2-cB_3vdy-a1-m1-cA
63 3vdy-a1-m1-cB 97 77 0.2211 0.2165 0.2727 2.2 3vdy-a1-m1-cB_3vdy-a1-m2-cB
64 4jqp-a1-m1-cB 330 20 0.1053 0.0303 0.5000 2.9 4jqp-a1-m1-cA_4jqp-a1-m1-cB
65 4jqp-a1-m1-cA 330 20 0.1053 0.0303 0.5000 2.9 4jqp-a1-m1-cA_4jqp-a1-m1-cB
66 2fxq-a1-m2-cA 197 103 0.2737 0.1320 0.2524 3.6 2fxq-a1-m1-cA_2fxq-a1-m2-cA
67 2fxq-a1-m2-cA 197 95 0.2737 0.1320 0.2737 7.1 2fxq-a1-m1-cA_2fxq-a1-m2-cA
68 2fxq-a1-m1-cA 197 103 0.2737 0.1320 0.2524 3.6 2fxq-a1-m1-cA_2fxq-a1-m2-cA
69 2fxq-a1-m1-cA 197 95 0.2737 0.1320 0.2737 7.1 2fxq-a1-m1-cA_2fxq-a1-m2-cA
70 1bjm-a1-m1-cB 215 52 0.1684 0.0744 0.3077 3.7 1bjm-a1-m1-cA_1bjm-a1-m1-cB
71 1bjm-a1-m1-cA 215 52 0.1684 0.0744 0.3077 3.7 1bjm-a1-m1-cA_1bjm-a1-m1-cB
72 6w8p-a1-m1-cA 418 27 0.1474 0.0335 0.5185 4.8 6w8p-a1-m1-cA_6w8p-a1-m1-cB
73 2ihf-a1-m2-cA 205 105 0.2632 0.1220 0.2381 5.4 2ihf-a1-m1-cA_2ihf-a1-m2-cA
74 2ihf-a1-m1-cA 205 105 0.2632 0.1220 0.2381 5.4 2ihf-a1-m1-cA_2ihf-a1-m2-cA
75 7pik-a1-m1-cC 557 35 0.1263 0.0215 0.3429 8.7 7pik-a1-m1-cD_7pik-a1-m1-cC

[Back]
Reference:
Jacob Schwartz et al.

petefredumich.edu | 1150 W. Medical Center Dr., Ann Arbor, MI 48109-0600