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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=96)
SDAHVLKSRLEPAFTILDVRDRSTYNDGHIGAAPIEDLVDRASSSLEKSRDIYVYGAGDE
QTSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTEL

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3k9r-a1-m1-cA 96 96 1.0000 1.0000 1.0000 1.08e-66 3k9r-a1-m2-cD_3k9r-a1-m1-cA
2 3k9r-a5-m1-cD 95 95 0.9896 1.0000 1.0000 4.40e-66 3k9r-a5-m1-cD_3k9r-a5-m1-cC
3 3k9r-a4-m2-cD 95 95 0.9896 1.0000 1.0000 4.40e-66 3k9r-a4-m2-cD_3k9r-a4-m1-cB
4 3k9r-a1-m2-cD 95 95 0.9896 1.0000 1.0000 4.40e-66 3k9r-a1-m2-cD_3k9r-a1-m1-cA
5 3k9r-a5-m1-cC 103 99 1.0000 0.9320 0.9697 4.10e-64 3k9r-a5-m1-cD_3k9r-a5-m1-cC
6 3k9r-a1-m2-cC 103 99 1.0000 0.9320 0.9697 4.10e-64 3k9r-a1-m1-cB_3k9r-a1-m2-cC
7 3k9r-a4-m1-cB 98 98 0.9896 0.9694 0.9694 1.25e-63 3k9r-a4-m2-cD_3k9r-a4-m1-cB
8 3k9r-a1-m1-cB 98 98 0.9896 0.9694 0.9694 1.25e-63 3k9r-a1-m1-cB_3k9r-a1-m2-cC
9 3ilm-a2-m1-cC 122 98 0.9896 0.7787 0.9694 1.43e-63 3ilm-a2-m1-cD_3ilm-a2-m1-cC
10 3ilm-a2-m1-cD 121 98 0.9896 0.7851 0.9694 1.53e-63 3ilm-a2-m1-cD_3ilm-a2-m1-cC
11 3hix-a5-m3-cC 84 84 0.8750 1.0000 1.0000 2.04e-57 3hix-a5-m1-cC_3hix-a5-m3-cC
12 3hix-a5-m1-cC 84 84 0.8750 1.0000 1.0000 2.04e-57 3hix-a5-m1-cC_3hix-a5-m3-cC
13 1qxn-a1-m1-cB 137 92 0.2500 0.1752 0.2609 0.006 1qxn-a1-m1-cA_1qxn-a1-m1-cB
14 1qxn-a1-m1-cA 137 92 0.2500 0.1752 0.2609 0.006 1qxn-a1-m1-cA_1qxn-a1-m1-cB
15 2hhg-a2-m2-cA 128 91 0.2604 0.1953 0.2747 0.017 2hhg-a2-m1-cA_2hhg-a2-m2-cA
16 2hhg-a2-m1-cA 128 91 0.2604 0.1953 0.2747 0.017 2hhg-a2-m1-cA_2hhg-a2-m2-cA
17 6pfz-a2-m1-cA 541 54 0.1979 0.0351 0.3519 0.025 6pfz-a2-m1-cA_6pfz-a2-m1-cB
18 6mxv-a1-m1-cB 246 85 0.2396 0.0935 0.2706 0.029 6mxv-a1-m1-cA_6mxv-a1-m1-cB
19 6mxv-a1-m1-cA 245 85 0.2396 0.0939 0.2706 0.030 6mxv-a1-m1-cA_6mxv-a1-m1-cB
20 4w6q-a1-m1-cA 331 86 0.2708 0.0785 0.3023 0.40 4w6q-a1-m1-cA_4w6q-a1-m1-cD
21 4w6q-a1-m1-cD 332 86 0.2708 0.0783 0.3023 0.40 4w6q-a1-m1-cA_4w6q-a1-m1-cD, 4w6q-a1-m1-cB_4w6q-a1-m1-cD, 4w6q-a1-m1-cC_4w6q-a1-m1-cD
22 4w6q-a1-m1-cC 332 86 0.2708 0.0783 0.3023 0.40 4w6q-a1-m1-cC_4w6q-a1-m1-cD
23 4w6q-a1-m1-cB 332 86 0.2708 0.0783 0.3023 0.40 4w6q-a1-m1-cB_4w6q-a1-m1-cD
24 7uwk-a1-m1-cI 249 55 0.1771 0.0683 0.3091 1.9 7uwk-a1-m1-cI_7uwk-a1-m1-cL
25 7uwk-a1-m1-cL 252 55 0.1771 0.0675 0.3091 1.9 7uwk-a1-m1-cI_7uwk-a1-m1-cL
26 6ve6-a3-m1-cC 264 81 0.2188 0.0795 0.2593 2.3 6ve6-a3-m1-cC_6ve6-a3-m1-cD
27 6ve6-a3-m1-cD 266 81 0.2188 0.0789 0.2593 2.3 6ve6-a3-m1-cC_6ve6-a3-m1-cD
28 1zrn-a1-m2-cA 220 50 0.1458 0.0636 0.2800 7.0 1zrn-a1-m1-cA_1zrn-a1-m2-cA
29 1zrn-a1-m1-cA 220 50 0.1458 0.0636 0.2800 7.0 1zrn-a1-m1-cA_1zrn-a1-m2-cA
30 4isb-a1-m1-cA 499 68 0.2188 0.0421 0.3088 7.6 4isb-a1-m1-cB_4isb-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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