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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=99)
SDFVRKLYKMLEDPSYHSVVRWSDDGDSFVVLENEKFTKTILPKHFKHSNFASFVRQLNK
YDFHKVRHNDEPYGRDAWEFKHPEFRADRKDNLDNIRRK

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5d5x-a1-m1-cB 99 99 1.0000 1.0000 1.0000 1.04e-69 5d5x-a1-m1-cE_5d5x-a1-m1-cB
2 5d5x-a1-m1-cE 98 99 0.9798 0.9898 0.9798 1.64e-66 5d5x-a1-m1-cE_5d5x-a1-m1-cB
3 7dcu-a1-m1-cB 102 97 0.4646 0.4510 0.4742 1.42e-27 7dcu-a1-m1-cC_7dcu-a1-m1-cB
4 5d8l-a2-m1-cF 98 97 0.4646 0.4694 0.4742 2.00e-26 5d8l-a2-m1-cF_5d8l-a2-m1-cH
5 5d5u-a1-m2-cB 100 97 0.4646 0.4600 0.4742 4.71e-26 5d5u-a1-m1-cB_5d5u-a1-m2-cB
6 5d5u-a1-m1-cB 100 97 0.4646 0.4600 0.4742 4.71e-26 5d5u-a1-m1-cB_5d5u-a1-m2-cB
7 5d8l-a2-m1-cH 106 101 0.4646 0.4340 0.4554 5.15e-26 5d8l-a2-m1-cF_5d8l-a2-m1-cH
8 7dcs-a2-m1-cE 105 101 0.4545 0.4286 0.4455 1.43e-24 7dcs-a2-m1-cF_7dcs-a2-m1-cE
9 7dcu-a1-m1-cC 92 97 0.4444 0.4783 0.4536 2.18e-24 7dcu-a1-m1-cC_7dcu-a1-m1-cB
10 7dcs-a2-m1-cF 93 97 0.4343 0.4624 0.4433 4.26e-24 7dcs-a2-m1-cF_7dcs-a2-m1-cE
11 5hdg-a2-m2-cA 94 96 0.4242 0.4468 0.4375 1.70e-23 5hdg-a2-m1-cA_5hdg-a2-m2-cA
12 5hdg-a2-m1-cA 94 96 0.4242 0.4468 0.4375 1.70e-23 5hdg-a2-m1-cA_5hdg-a2-m2-cA
13 6j6w-a1-m2-cB 94 96 0.4242 0.4468 0.4375 3.00e-23 6j6w-a1-m1-cA_6j6w-a1-m2-cB, 6j6w-a1-m2-cA_6j6w-a1-m2-cB
14 6j6w-a1-m2-cA 94 96 0.4242 0.4468 0.4375 3.00e-23 6j6w-a1-m2-cA_6j6w-a1-m2-cB
15 6j6w-a1-m1-cA 94 96 0.4242 0.4468 0.4375 3.00e-23 6j6w-a1-m1-cA_6j6w-a1-m2-cB
16 3hts-a1-m2-cB 82 80 0.4141 0.5000 0.5125 1.34e-22 3hts-a1-m1-cB_3hts-a1-m2-cB
17 3hts-a1-m1-cB 82 80 0.4141 0.5000 0.5125 1.34e-22 3hts-a1-m1-cB_3hts-a1-m2-cB
18 1fbs-a1-m1-cA 87 65 0.3535 0.4023 0.5385 2.39e-19 1fbs-a1-m1-cA_1fbs-a1-m1-cB
19 1fbs-a1-m1-cB 90 65 0.3535 0.3889 0.5385 2.77e-19 1fbs-a1-m1-cA_1fbs-a1-m1-cB
20 7khv-a3-m1-cE 586 37 0.1212 0.0205 0.3243 7.3 7khv-a3-m1-cF_7khv-a3-m1-cE
21 7khv-a3-m1-cF 539 37 0.1212 0.0223 0.3243 7.9 7khv-a3-m1-cF_7khv-a3-m1-cE

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Reference:
Jacob Schwartz et al.

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