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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=98)
SDFVRKLYKMLEDPSYHSVVRWSDDGDSFVVLENEKFTKTILPKHFKHSNFASFVRQLNK
YDFHKVRHNSPYGRDAWEFKHPEFRADRKDNLDNIRRK

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5d5x-a1-m1-cE 98 98 1.0000 1.0000 1.0000 6.34e-69 5d5x-a1-m1-cE_5d5x-a1-m1-cB
2 5d5x-a1-m1-cB 99 99 0.9898 0.9798 0.9798 1.62e-66 5d5x-a1-m1-cE_5d5x-a1-m1-cB
3 7dcu-a1-m1-cB 102 97 0.4796 0.4608 0.4845 5.26e-27 7dcu-a1-m1-cC_7dcu-a1-m1-cB
4 5d8l-a2-m1-cF 98 98 0.4694 0.4694 0.4694 1.34e-25 5d8l-a2-m1-cF_5d8l-a2-m1-cH
5 7dcs-a2-m1-cE 105 101 0.4694 0.4381 0.4554 2.62e-25 7dcs-a2-m1-cF_7dcs-a2-m1-cE
6 5d5u-a1-m2-cB 100 96 0.4592 0.4500 0.4688 6.31e-25 5d5u-a1-m1-cB_5d5u-a1-m2-cB
7 5d5u-a1-m1-cB 100 96 0.4592 0.4500 0.4688 6.31e-25 5d5u-a1-m1-cB_5d5u-a1-m2-cB
8 5d8l-a2-m1-cH 106 101 0.4796 0.4434 0.4653 7.44e-25 5d8l-a2-m1-cF_5d8l-a2-m1-cH
9 7dcu-a1-m1-cC 92 96 0.4592 0.4891 0.4688 1.31e-24 7dcu-a1-m1-cC_7dcu-a1-m1-cB
10 7dcs-a2-m1-cF 93 96 0.4388 0.4624 0.4479 1.39e-24 7dcs-a2-m1-cF_7dcs-a2-m1-cE
11 5hdg-a2-m2-cA 94 95 0.4286 0.4468 0.4421 5.75e-23 5hdg-a2-m1-cA_5hdg-a2-m2-cA
12 5hdg-a2-m1-cA 94 95 0.4286 0.4468 0.4421 5.75e-23 5hdg-a2-m1-cA_5hdg-a2-m2-cA
13 6j6w-a1-m2-cB 94 95 0.4286 0.4468 0.4421 5.81e-23 6j6w-a1-m1-cA_6j6w-a1-m2-cB, 6j6w-a1-m2-cA_6j6w-a1-m2-cB
14 6j6w-a1-m2-cA 94 95 0.4286 0.4468 0.4421 5.81e-23 6j6w-a1-m2-cA_6j6w-a1-m2-cB
15 6j6w-a1-m1-cA 94 95 0.4286 0.4468 0.4421 5.81e-23 6j6w-a1-m1-cA_6j6w-a1-m2-cB
16 3hts-a1-m2-cB 82 79 0.4082 0.4878 0.5063 1.18e-21 3hts-a1-m1-cB_3hts-a1-m2-cB
17 3hts-a1-m1-cB 82 79 0.4082 0.4878 0.5063 1.18e-21 3hts-a1-m1-cB_3hts-a1-m2-cB
18 1fbs-a1-m1-cA 87 65 0.3571 0.4023 0.5385 2.55e-19 1fbs-a1-m1-cA_1fbs-a1-m1-cB
19 1fbs-a1-m1-cB 90 65 0.3571 0.3889 0.5385 2.85e-19 1fbs-a1-m1-cA_1fbs-a1-m1-cB
20 4f23-a1-m1-cC 509 42 0.1531 0.0295 0.3571 0.68 4f23-a1-m1-cB_4f23-a1-m1-cC
21 4f23-a1-m1-cB 509 42 0.1531 0.0295 0.3571 0.68 4f23-a1-m1-cB_4f23-a1-m1-cC
22 4d0m-a3-m1-cc 470 64 0.1837 0.0383 0.2812 2.6 4d0m-a3-m1-cW_4d0m-a3-m1-cc
23 4d0m-a3-m1-cW 470 64 0.1837 0.0383 0.2812 2.6 4d0m-a3-m1-cW_4d0m-a3-m1-cc
24 5k3i-a1-m1-cA 661 41 0.1327 0.0197 0.3171 5.8 5k3i-a1-m1-cB_5k3i-a1-m1-cA
25 5k3i-a1-m1-cB 657 41 0.1327 0.0198 0.3171 5.9 5k3i-a1-m1-cB_5k3i-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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