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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=87)
SDKLELLLDIPLKVTVELGRTRMTLKRVLEMIHGSIIELDKLTGEPVDILVNGKLIARGE
VVVIDENFGVRITEIVSPKERLELLNE

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1yab-a3-m2-cB 87 87 1.0000 1.0000 1.0000 1.14e-54 1yab-a3-m1-cA_1yab-a3-m2-cB, 1yab-a3-m2-cA_1yab-a3-m2-cB
2 1yab-a3-m2-cA 85 85 0.9770 1.0000 1.0000 4.12e-53 1yab-a3-m2-cA_1yab-a3-m2-cB
3 1yab-a3-m1-cA 85 85 0.9770 1.0000 1.0000 4.12e-53 1yab-a3-m1-cA_1yab-a3-m2-cB
4 4yxb-a1-m1-cA 157 78 0.5402 0.2994 0.6026 6.28e-27 4yxb-a1-m1-cA_4yxb-a1-m1-cB
5 4yxb-a1-m1-cB 169 78 0.5402 0.2781 0.6026 9.02e-27 4yxb-a1-m1-cA_4yxb-a1-m1-cB
6 3uep-a1-m1-cB 85 79 0.2759 0.2824 0.3038 4.65e-05 3uep-a1-m1-cA_3uep-a1-m1-cB
7 3uep-a1-m1-cA 85 79 0.2759 0.2824 0.3038 4.65e-05 3uep-a1-m1-cA_3uep-a1-m1-cB
8 4tt9-a2-m1-cC 72 65 0.2184 0.2639 0.2923 0.004 4tt9-a2-m1-cD_4tt9-a2-m1-cC
9 1o9y-a1-m1-cD 72 69 0.1954 0.2361 0.2464 0.010 1o9y-a1-m1-cA_1o9y-a1-m1-cD
10 1o9y-a1-m1-cB 71 68 0.1954 0.2394 0.2500 0.017 1o9y-a1-m1-cA_1o9y-a1-m1-cB
11 1o9y-a1-m1-cA 71 68 0.1954 0.2394 0.2500 0.017 1o9y-a1-m1-cA_1o9y-a1-m1-cB, 1o9y-a1-m1-cA_1o9y-a1-m1-cD
12 4tt9-a2-m1-cD 68 65 0.2184 0.2794 0.2923 0.91 4tt9-a2-m1-cD_4tt9-a2-m1-cC
13 1mw5-a1-m2-cB 159 47 0.1954 0.1069 0.3617 1.1 1mw5-a1-m1-cA_1mw5-a1-m2-cB, 1mw5-a1-m1-cB_1mw5-a1-m2-cB, 1mw5-a1-m2-cA_1mw5-a1-m2-cB
14 1mw5-a1-m2-cA 159 47 0.1954 0.1069 0.3617 1.1 1mw5-a1-m2-cA_1mw5-a1-m2-cB
15 1mw5-a1-m1-cB 159 47 0.1954 0.1069 0.3617 1.1 1mw5-a1-m1-cB_1mw5-a1-m2-cB
16 1mw5-a1-m1-cA 159 47 0.1954 0.1069 0.3617 1.1 1mw5-a1-m1-cA_1mw5-a1-m2-cB
17 7ucw-a1-m1-cC 279 53 0.2069 0.0645 0.3396 2.6 7ucw-a1-m1-cC_7ucw-a1-m1-cD
18 7ucw-a1-m1-cD 279 53 0.2069 0.0645 0.3396 2.8 7ucw-a1-m1-cA_7ucw-a1-m1-cD, 7ucw-a1-m1-cC_7ucw-a1-m1-cD, 7ucw-a1-m1-cD_7ucw-a1-m1-cB
19 7ucw-a1-m1-cB 281 53 0.2069 0.0641 0.3396 2.8 7ucw-a1-m1-cD_7ucw-a1-m1-cB
20 1k1d-a2-m1-cF 459 29 0.1264 0.0240 0.3793 2.9 1k1d-a2-m1-cC_1k1d-a2-m1-cF, 1k1d-a2-m1-cE_1k1d-a2-m1-cF
21 1k1d-a2-m1-cE 459 29 0.1264 0.0240 0.3793 2.9 1k1d-a2-m1-cE_1k1d-a2-m1-cF
22 1k1d-a2-m1-cC 459 29 0.1264 0.0240 0.3793 2.9 1k1d-a2-m1-cC_1k1d-a2-m1-cF
23 7ucw-a1-m1-cA 278 53 0.2069 0.0647 0.3396 3.1 7ucw-a1-m1-cA_7ucw-a1-m1-cD
24 6cko-a1-m1-cA 66 43 0.1839 0.2424 0.3721 3.6 6cko-a1-m1-cA_6cko-a1-m4-cB
25 6cko-a1-m4-cB 67 43 0.1839 0.2388 0.3721 3.6 6cko-a1-m1-cA_6cko-a1-m4-cB
26 6jn2-a1-m4-cA 67 43 0.1839 0.2388 0.3721 4.6 6jn2-a1-m1-cA_6jn2-a1-m4-cA, 6jn2-a1-m2-cA_6jn2-a1-m4-cA, 6jn2-a1-m3-cA_6jn2-a1-m4-cA
27 6jn2-a1-m3-cA 67 43 0.1839 0.2388 0.3721 4.6 6jn2-a1-m3-cA_6jn2-a1-m4-cA
28 6jn2-a1-m2-cA 67 43 0.1839 0.2388 0.3721 4.6 6jn2-a1-m2-cA_6jn2-a1-m4-cA
29 6jn2-a1-m1-cA 67 43 0.1839 0.2388 0.3721 4.6 6jn2-a1-m1-cA_6jn2-a1-m4-cA
30 1gkr-a1-m1-cD 450 32 0.1264 0.0244 0.3438 7.2 1gkr-a1-m1-cB_1gkr-a1-m1-cD, 1gkr-a1-m1-cC_1gkr-a1-m1-cD
31 1gkr-a1-m1-cC 450 32 0.1264 0.0244 0.3438 7.2 1gkr-a1-m1-cC_1gkr-a1-m1-cD
32 1gkr-a1-m1-cB 450 32 0.1264 0.0244 0.3438 7.2 1gkr-a1-m1-cB_1gkr-a1-m1-cD
33 2aal-a2-m1-cE 129 27 0.1034 0.0698 0.3333 9.0 2aal-a2-m1-cD_2aal-a2-m1-cE
34 2aal-a2-m1-cD 129 27 0.1034 0.0698 0.3333 9.0 2aal-a2-m1-cD_2aal-a2-m1-cE
35 3o4z-a6-m1-cD 572 28 0.1494 0.0227 0.4643 9.8 3o4z-a6-m1-cB_3o4z-a6-m1-cD
36 3o4z-a6-m1-cB 572 28 0.1494 0.0227 0.4643 9.8 3o4z-a6-m1-cB_3o4z-a6-m1-cD

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Reference:
Jacob Schwartz et al.

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