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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=92)
SDNWMGRAKEIGNGGWDQFQFLFFDPNGYLYAVSNDKLYKASPPQSDTDNWIARATEIGS
GGWSGFKFLFFHPNGYLYAVRGQRFYKALPPV

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3kif-a3-m1-cI 94 92 1.0000 0.9787 1.0000 4.93e-65 3kif-a3-m1-cH_3kif-a3-m1-cI
2 3kif-a3-m1-cI 94 45 0.3261 0.3191 0.6667 1.76e-16 3kif-a3-m1-cH_3kif-a3-m1-cI
3 3kif-a3-m1-cI 94 46 0.3261 0.3191 0.6522 8.00e-16 3kif-a3-m1-cH_3kif-a3-m1-cI
4 3kif-a3-m1-cF 92 92 1.0000 1.0000 1.0000 5.11e-65 3kif-a3-m1-cG_3kif-a3-m1-cF, 3kif-a3-m1-cH_3kif-a3-m1-cF
5 3kif-a1-m1-cA 93 92 1.0000 0.9892 1.0000 6.43e-65 3kif-a1-m1-cG_3kif-a1-m1-cA
6 3kif-a1-m1-cA 93 45 0.3261 0.3226 0.6667 1.87e-16 3kif-a1-m1-cG_3kif-a1-m1-cA
7 3kif-a3-m1-cJ 93 90 0.9783 0.9677 1.0000 1.41e-63 3kif-a3-m1-cG_3kif-a3-m1-cJ, 3kif-a3-m1-cH_3kif-a3-m1-cJ
8 3kif-a3-m1-cJ 93 47 0.3261 0.3226 0.6383 4.15e-16 3kif-a3-m1-cG_3kif-a3-m1-cJ, 3kif-a3-m1-cH_3kif-a3-m1-cJ
9 3kif-a3-m1-cG 88 88 0.9565 1.0000 1.0000 7.09e-62 3kif-a3-m1-cG_3kif-a3-m1-cF, 3kif-a3-m1-cG_3kif-a3-m1-cJ
10 3kif-a3-m1-cG 88 44 0.3152 0.3295 0.6591 1.19e-15 3kif-a3-m1-cG_3kif-a3-m1-cF, 3kif-a3-m1-cG_3kif-a3-m1-cJ
11 3kif-a1-m1-cG 88 88 0.9565 1.0000 1.0000 7.09e-62 3kif-a1-m1-cG_3kif-a1-m1-cA
12 3kif-a1-m1-cG 88 44 0.3152 0.3295 0.6591 1.19e-15 3kif-a1-m1-cG_3kif-a1-m1-cA
13 3kif-a3-m1-cH 85 84 0.9130 0.9882 1.0000 1.72e-58 3kif-a3-m1-cH_3kif-a3-m1-cF, 3kif-a3-m1-cH_3kif-a3-m1-cI, 3kif-a3-m1-cH_3kif-a3-m1-cJ
14 3kif-a3-m1-cH 85 46 0.3261 0.3529 0.6522 4.26e-16 3kif-a3-m1-cH_3kif-a3-m1-cF, 3kif-a3-m1-cH_3kif-a3-m1-cI, 3kif-a3-m1-cH_3kif-a3-m1-cJ
15 3kih-a1-m1-cB 95 62 0.5978 0.5789 0.8871 7.97e-36 3kih-a1-m1-cC_3kih-a1-m1-cB, 3kih-a1-m1-cE_3kih-a1-m1-cB
16 3kih-a1-m1-cB 95 77 0.5109 0.4947 0.6104 1.15e-30 3kih-a1-m1-cC_3kih-a1-m1-cB, 3kih-a1-m1-cE_3kih-a1-m1-cB
17 3kih-a1-m1-cC 91 59 0.5761 0.5824 0.8983 1.80e-34 3kih-a1-m1-cA_3kih-a1-m1-cC, 3kih-a1-m1-cC_3kih-a1-m1-cB, 3kih-a1-m1-cE_3kih-a1-m1-cC
18 3kih-a1-m1-cC 91 77 0.5000 0.5055 0.5974 7.16e-28 3kih-a1-m1-cA_3kih-a1-m1-cC, 3kih-a1-m1-cC_3kih-a1-m1-cB, 3kih-a1-m1-cE_3kih-a1-m1-cC
19 3kih-a1-m1-cE 90 58 0.5652 0.5778 0.8966 8.20e-34 3kih-a1-m1-cE_3kih-a1-m1-cB, 3kih-a1-m1-cE_3kih-a1-m1-cC, 3kih-a1-m1-cE_3kih-a1-m1-cD
20 3kih-a1-m1-cE 90 77 0.5000 0.5111 0.5974 8.66e-28 3kih-a1-m1-cE_3kih-a1-m1-cB, 3kih-a1-m1-cE_3kih-a1-m1-cC, 3kih-a1-m1-cE_3kih-a1-m1-cD
21 3kih-a1-m1-cA 90 58 0.5652 0.5778 0.8966 8.20e-34 3kih-a1-m1-cA_3kih-a1-m1-cC
22 3kih-a1-m1-cA 90 77 0.5000 0.5111 0.5974 8.66e-28 3kih-a1-m1-cA_3kih-a1-m1-cC
23 3kih-a1-m1-cD 91 58 0.5543 0.5604 0.8793 4.05e-33 3kih-a1-m1-cE_3kih-a1-m1-cD
24 3kih-a1-m1-cD 91 77 0.5109 0.5165 0.6104 1.17e-30 3kih-a1-m1-cE_3kih-a1-m1-cD
25 7vee-a1-m2-cA 828 52 0.1957 0.0217 0.3462 4.0 7vee-a1-m1-cA_7vee-a1-m2-cA
26 7vee-a1-m1-cA 828 52 0.1957 0.0217 0.3462 4.0 7vee-a1-m1-cA_7vee-a1-m2-cA
27 1g8k-a6-m1-cC 822 80 0.2283 0.0255 0.2625 4.4 1g8k-a6-m1-cA_1g8k-a6-m1-cC
28 1g8k-a6-m1-cA 822 80 0.2283 0.0255 0.2625 4.4 1g8k-a6-m1-cA_1g8k-a6-m1-cC
29 7t2p-a1-m3-cA 493 65 0.1848 0.0345 0.2615 4.7 7t2p-a1-m2-cA_7t2p-a1-m3-cA
30 7t2p-a1-m2-cA 493 65 0.1848 0.0345 0.2615 4.7 7t2p-a1-m2-cA_7t2p-a1-m3-cA
31 5w4a-a2-m1-cD 210 26 0.1196 0.0524 0.4231 5.1 5w4a-a2-m1-cD_5w4a-a2-m1-cB
32 5w4a-a2-m1-cB 212 26 0.1196 0.0519 0.4231 5.5 5w4a-a2-m1-cD_5w4a-a2-m1-cB

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Reference:
Jacob Schwartz et al.

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