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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=45)
SDVENFERLFSKLKEMKDKAATLPHEQRKVHAEKVAKAFWMAIGG

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 7twd-a1-m2-cB 45 45 1.0000 1.0000 1.0000 7.03e-28 7twd-a1-m1-cA_7twd-a1-m2-cB, 7twd-a1-m2-cA_7twd-a1-m2-cB
2 7twd-a1-m2-cA 44 44 0.9778 1.0000 1.0000 6.40e-27 7twd-a1-m2-cA_7twd-a1-m2-cB
3 7twd-a1-m1-cA 44 44 0.9778 1.0000 1.0000 6.40e-27 7twd-a1-m1-cA_7twd-a1-m2-cB
4 5kp5-a1-m2-cA 403 36 0.2889 0.0323 0.3611 3.1 5kp5-a1-m1-cA_5kp5-a1-m2-cA
5 5kp5-a1-m1-cA 403 36 0.2889 0.0323 0.3611 3.1 5kp5-a1-m1-cA_5kp5-a1-m2-cA
6 1qpw-a1-m1-cC 141 48 0.3556 0.1135 0.3333 5.6 1qpw-a1-m1-cA_1qpw-a1-m1-cC
7 1qpw-a1-m1-cA 141 48 0.3556 0.1135 0.3333 5.6 1qpw-a1-m1-cA_1qpw-a1-m1-cC
8 4pts-a1-m1-cA 321 33 0.2222 0.0312 0.3030 9.2 4pts-a1-m1-cA_4pts-a1-m1-cB
9 4pts-a1-m1-cB 333 33 0.2222 0.0300 0.3030 9.2 4pts-a1-m1-cA_4pts-a1-m1-cB
10 3rk0-a1-m2-cA 209 42 0.2889 0.0622 0.3095 9.9 3rk0-a1-m1-cA_3rk0-a1-m2-cA
11 3rk0-a1-m1-cA 209 42 0.2889 0.0622 0.3095 9.9 3rk0-a1-m1-cA_3rk0-a1-m2-cA

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Reference:
Jacob Schwartz et al.

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