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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=76)
SEDYKLREAQRELDKQRKDTEEIRKRLKEIQRLTDERTSTADELIKELREIIRRLQEQSE
KLREIIEELEKIIRKR

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5j2l-a1-m1-cB 76 76 1.0000 1.0000 1.0000 1.46e-42 5j2l-a1-m1-cA_5j2l-a1-m1-cB
2 5j2l-a1-m1-cA 76 76 1.0000 1.0000 1.0000 1.46e-42 5j2l-a1-m1-cA_5j2l-a1-m1-cB
3 3obv-a2-m1-cH 419 65 0.1974 0.0358 0.2308 0.11 3obv-a2-m1-cH_3obv-a2-m1-cG
4 3obv-a2-m1-cG 420 65 0.1974 0.0357 0.2308 0.11 3obv-a2-m1-cH_3obv-a2-m1-cG
5 7f4y-a1-m1-cA 899 43 0.2500 0.0211 0.4419 0.12 7f4y-a1-m1-cA_7f4y-a1-m1-cB
6 7f4y-a1-m1-cB 901 43 0.2500 0.0211 0.4419 0.12 7f4y-a1-m1-cA_7f4y-a1-m1-cB
7 5j10-a1-m1-cB 70 40 0.2368 0.2571 0.4500 0.19 5j10-a1-m1-cA_5j10-a1-m1-cB
8 5j10-a1-m1-cA 70 40 0.2368 0.2571 0.4500 0.19 5j10-a1-m1-cA_5j10-a1-m1-cB
9 1v9d-a1-m1-cD 300 65 0.1974 0.0500 0.2308 0.20 1v9d-a1-m1-cC_1v9d-a1-m1-cD, 1v9d-a1-m1-cD_1v9d-a1-m1-cA
10 1v9d-a1-m1-cA 308 65 0.1974 0.0487 0.2308 0.22 1v9d-a1-m1-cD_1v9d-a1-m1-cA
11 1v9d-a1-m1-cC 278 65 0.1974 0.0540 0.2308 0.27 1v9d-a1-m1-cC_1v9d-a1-m1-cD
12 6umx-a1-m1-cA 279 55 0.2237 0.0609 0.3091 0.67 6umx-a1-m1-cB_6umx-a1-m1-cA
13 6umx-a1-m1-cB 273 54 0.2237 0.0623 0.3148 0.80 6umx-a1-m1-cB_6umx-a1-m1-cA
14 5nxs-a1-m1-cA 285 52 0.2237 0.0596 0.3269 1.1 5nxs-a1-m1-cB_5nxs-a1-m1-cA
15 5n2u-a1-m1-cC 467 49 0.1842 0.0300 0.2857 1.2 5n2u-a1-m1-cC_5n2u-a1-m1-cD
16 5n2u-a1-m1-cD 476 49 0.1842 0.0294 0.2857 1.2 5n2u-a1-m1-cC_5n2u-a1-m1-cD
17 2dq0-a1-m1-cB 447 49 0.2500 0.0425 0.3878 1.2 2dq0-a1-m1-cA_2dq0-a1-m1-cB
18 2dq0-a1-m1-cA 447 49 0.2500 0.0425 0.3878 1.2 2dq0-a1-m1-cA_2dq0-a1-m1-cB
19 5j0k-a1-m1-cA 74 66 0.3026 0.3108 0.3485 1.5 5j0k-a1-m1-cB_5j0k-a1-m1-cA
20 5j0k-a1-m1-cB 73 66 0.3026 0.3151 0.3485 1.6 5j0k-a1-m1-cB_5j0k-a1-m1-cA
21 7pzh-a1-m1-cAAA 201 26 0.1184 0.0448 0.3462 2.6 7pzh-a1-m1-cBBB_7pzh-a1-m1-cAAA
22 7pzh-a1-m1-cBBB 200 26 0.1184 0.0450 0.3462 2.7 7pzh-a1-m1-cBBB_7pzh-a1-m1-cAAA
23 3rta-a1-m8-cA 489 22 0.1579 0.0245 0.5455 3.8 3rta-a1-m3-cA_3rta-a1-m8-cA, 3rta-a1-m6-cA_3rta-a1-m8-cA
24 3rta-a1-m6-cA 489 22 0.1579 0.0245 0.5455 3.8 3rta-a1-m6-cA_3rta-a1-m8-cA
25 3rta-a1-m3-cA 489 22 0.1579 0.0245 0.5455 3.8 3rta-a1-m3-cA_3rta-a1-m8-cA
26 7rro-a1-m1-cB1 416 57 0.3158 0.0577 0.4211 4.8 7rro-a1-m1-cB0_7rro-a1-m1-cB1
27 7s06-a1-m1-cB 459 32 0.1447 0.0240 0.3438 6.3 7s06-a1-m1-cA_7s06-a1-m1-cB
28 7s06-a1-m1-cA 459 32 0.1447 0.0240 0.3438 6.3 7s06-a1-m1-cA_7s06-a1-m1-cB
29 4xbf-a1-m4-cA 666 73 0.2500 0.0285 0.2603 6.5 4xbf-a1-m2-cA_4xbf-a1-m4-cA, 4xbf-a1-m3-cA_4xbf-a1-m4-cA
30 4xbf-a1-m3-cA 666 73 0.2500 0.0285 0.2603 6.5 4xbf-a1-m3-cA_4xbf-a1-m4-cA
31 4xbf-a1-m2-cA 666 73 0.2500 0.0285 0.2603 6.5 4xbf-a1-m2-cA_4xbf-a1-m4-cA
32 5nxs-a1-m1-cB 246 55 0.2237 0.0691 0.3091 8.3 5nxs-a1-m1-cB_5nxs-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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