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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=60)
SEEMNLKILAYLGTKQGAKAVHIAQSLGAQRSEVNRHLYRMSEDGRVRKHPQHPVWYLPA

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4hob-a2-m1-cD 60 60 1.0000 1.0000 1.0000 2.01e-40 4hob-a2-m1-cD_4hob-a2-m1-cC
2 4hob-a2-m1-cC 67 60 1.0000 0.8955 1.0000 2.40e-40 4hob-a2-m1-cD_4hob-a2-m1-cC
3 4wcg-a1-m1-cB 61 59 0.9833 0.9672 1.0000 1.15e-39 4wcg-a1-m1-cA_4wcg-a1-m1-cB
4 4wcg-a1-m1-cA 61 59 0.9833 0.9672 1.0000 1.15e-39 4wcg-a1-m1-cA_4wcg-a1-m1-cB
5 7c0i-a2-m2-cC 65 44 0.2167 0.2000 0.2955 0.004 7c0i-a2-m1-cC_7c0i-a2-m2-cC
6 7c0i-a2-m1-cC 65 44 0.2167 0.2000 0.2955 0.004 7c0i-a2-m1-cC_7c0i-a2-m2-cC
7 7pza-a1-m1-cA 225 27 0.1833 0.0489 0.4074 0.60 7pza-a1-m1-cA_7pza-a1-m1-cB
8 7pza-a1-m1-cB 226 27 0.1833 0.0487 0.4074 0.62 7pza-a1-m1-cA_7pza-a1-m1-cB
9 1c7s-a1-m2-cA 858 44 0.2500 0.0175 0.3409 1.0 1c7s-a1-m1-cA_1c7s-a1-m2-cA
10 1c7s-a1-m1-cA 858 44 0.2500 0.0175 0.3409 1.0 1c7s-a1-m1-cA_1c7s-a1-m2-cA
11 7ets-a1-m1-cA 221 38 0.1833 0.0498 0.2895 1.1 7ets-a1-m1-cA_7ets-a1-m1-cB
12 7ets-a1-m1-cB 222 38 0.1833 0.0495 0.2895 1.1 7ets-a1-m1-cA_7ets-a1-m1-cB
13 1xfb-a3-m1-cL 342 44 0.2500 0.0439 0.3409 2.1 1xfb-a3-m1-cI_1xfb-a3-m1-cL, 1xfb-a3-m1-cK_1xfb-a3-m1-cL
14 1xfb-a3-m1-cK 342 44 0.2500 0.0439 0.3409 2.1 1xfb-a3-m1-cK_1xfb-a3-m1-cL
15 1xfb-a3-m1-cI 342 44 0.2500 0.0439 0.3409 2.1 1xfb-a3-m1-cI_1xfb-a3-m1-cL
16 2ewn-a1-m1-cB 317 40 0.1667 0.0315 0.2500 5.0 2ewn-a1-m1-cB_2ewn-a1-m1-cA
17 2ewn-a1-m1-cA 318 40 0.1667 0.0314 0.2500 5.1 2ewn-a1-m1-cB_2ewn-a1-m1-cA
18 2x4h-a1-m1-cC 131 51 0.2833 0.1298 0.3333 5.6 2x4h-a1-m1-cB_2x4h-a1-m1-cC, 2x4h-a1-m1-cD_2x4h-a1-m1-cC
19 2x4h-a1-m1-cB 130 51 0.2833 0.1308 0.3333 5.8 2x4h-a1-m1-cB_2x4h-a1-m1-cC, 2x4h-a1-m1-cD_2x4h-a1-m1-cB
20 2x4h-a1-m1-cD 129 51 0.2833 0.1318 0.3333 6.0 2x4h-a1-m1-cD_2x4h-a1-m1-cB, 2x4h-a1-m1-cD_2x4h-a1-m1-cC
21 7kua-a1-m2-cA 149 45 0.2167 0.0872 0.2889 6.4 7kua-a1-m1-cA_7kua-a1-m2-cA
22 7kua-a1-m1-cA 149 45 0.2167 0.0872 0.2889 6.4 7kua-a1-m1-cA_7kua-a1-m2-cA
23 3kv9-a2-m2-cA 366 31 0.1667 0.0273 0.3226 7.0 3kv9-a2-m1-cA_3kv9-a2-m2-cA
24 3kv9-a2-m1-cA 366 31 0.1667 0.0273 0.3226 7.0 3kv9-a2-m1-cA_3kv9-a2-m2-cA
25 3kv5-a3-m1-cA 447 31 0.1667 0.0224 0.3226 7.1 3kv5-a3-m2-cD_3kv5-a3-m1-cA
26 4a2u-a4-m1-cG 224 51 0.2667 0.0714 0.3137 8.0 4a2u-a4-m1-cG_4a2u-a4-m1-cH
27 4a2u-a4-m1-cH 227 51 0.2667 0.0705 0.3137 8.9 4a2u-a4-m1-cG_4a2u-a4-m1-cH

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Reference:
Jacob Schwartz et al.

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